View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_17 (Length: 311)
Name: NF13820_low_17
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 6433077 - 6432797
Alignment:
| Q |
13 |
aatatgcaaaacaaaaaacagaaagcatggaaataacattggtaaagaaagattcatatgccaaatgtttcttgcttatacacaagatagtaaacataat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
6433077 |
aatatgcaaaacaaaaaacagaaagcatggaaataacattggtaaagaaagattcatatgccaaatgtttcttgctcatacacaagatagtacgcataat |
6432978 |
T |
|
| Q |
113 |
atgtgaaattgaaatgcctacttgcattgtaatgacttcataacattcaacttcataataaaatcctaaattctaataattatacttataaccctcttgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6432977 |
atgtgaaattgaaatgcctacttgcattgtaatgacttcataacattcaacttcataataaaatcctaaattctaataattatacttataaccctcttga |
6432878 |
T |
|
| Q |
213 |
gaaaaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgcc |
293 |
Q |
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| T |
6432877 |
gaaaaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgcc |
6432797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 26542428 - 26542261
Alignment:
| Q |
40 |
tggaaataacattggtaaagaaagattcatatgccaaatgtttcttgcttatacacaagatagtaaacataatatgtgaaattgaaatgcctacttgcat |
139 |
Q |
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| T |
26542428 |
tggaaataaaaatggtaaagaaagattcttaagccaataatttctttcttatacacttgatagtaaatataatatgggaaac------gcctatttgcat |
26542335 |
T |
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| Q |
140 |
tgtaatgacttcataacattcaacttcataataaaatcctaaattctaataattatacttataaccctcttggga |
214 |
Q |
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| T |
26542334 |
tgcaacgacttcataatattcaacttg-taataaaatcctaaattctaataattgtacttataactctcttggga |
26542261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 26532669 - 26532569
Alignment:
| Q |
191 |
attatacttataaccctcttgggaaaaagctttaaacttgag-atgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaat |
289 |
Q |
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|||||||||| ||||||||||| ||||||||| |||||| | ||| |||||||| ||| | | || |||||||| ||||||||||||||| |||||| |
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| T |
26532669 |
attatacttaaaaccctcttggataaaagctttgaacttgggaatgaaaaaataattaattttttttccgaccaatcggaagaaagtttttctgataaat |
26532570 |
T |
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| Q |
290 |
t |
290 |
Q |
| |
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| |
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|
| T |
26532569 |
t |
26532569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 1329051 - 1328975
Alignment:
| Q |
216 |
aaagctttaaacttgagatgcaaaaataactaactcctctttcgaccaattggaagaaagtttttcctataaattgc |
292 |
Q |
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||||||||||||||| ||| |||| | |||||| || | |||| ||||||||||||| |||||| |||||||||| |
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| T |
1329051 |
aaagctttaaacttgggatccaaatacaactaattcttaattcggccaattggaagaagatttttcttataaattgc |
1328975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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