View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_18 (Length: 308)
Name: NF13820_low_18
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 54032677 - 54032395
Alignment:
| Q |
9 |
aatatatgatccgggcaagatgaagaaatcggcacctgtgttgaaattttaatcaaatgtccattgatgaataataatcttgtcacctaaaagattatta |
108 |
Q |
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| T |
54032677 |
aatatatgatccgggcaagatgaagaaatcggcacctgtgttgaaattttaatcaaatgtccattgatgaataataatcttgtcacctaaaagattatta |
54032578 |
T |
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| Q |
109 |
attctggttttattaattttttacctgcatgatcatccaacatgaccaaaaaacactacttgctaagagcaatagacaacccagaatccaagtatcatct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54032577 |
attctggttttattaattttttacctgcatgatcatccaacatgaccaaaaaacactacttgctaagagcaatagacaacccagaatccaagtatcatct |
54032478 |
T |
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| Q |
209 |
ccacttgcagtgagatgtttggaatcaggaagaaagtactccatatgtaacagcttatttcctttgagaaatgccatggttaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54032477 |
ccacttgcagtgagatgtttggaatcaggaagaaagaactccatatgtaacagcttatttcctttgagaaatgccatggttaa |
54032395 |
T |
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