View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_2 (Length: 540)
Name: NF13820_low_2
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 495
Target Start/End: Complemental strand, 38102059 - 38101577
Alignment:
| Q |
13 |
atcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38102059 |
atcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
38101960 |
T |
|
| Q |
113 |
tgcattgaatnnnnnnnttaaggaaaaatattaaagagttataagtttcatatattaacctgccaaagtccccaaaatatacaatttgcattcttatata |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101959 |
tgcattgaataaaaaaattaaggaaaaatattaaagagttataagtttcatatattaacctgccaaagtccccaaaatatacaatttgcattcttatata |
38101860 |
T |
|
| Q |
213 |
ggcgtgtctactccacattaaatgagatttgaatccaatcaacactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101859 |
ggcgtgtctactccacattaaatgagatttgaatccaatcaacactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
38101760 |
T |
|
| Q |
313 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccaccataataaatccccagtcaaaagaaagaaagaagtgcattcagtgttagaagag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101759 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccaccataataaatccccagtcaaaagaaagaaagaagtgcattcagtgttagaagag |
38101660 |
T |
|
| Q |
413 |
aaatgacaaaaaccatcttttttgaaaacttgcaatttcagtttatatatttcttctttcaaataaaggctggatagacacta |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101659 |
aaatgacaaaaaccatcttttttgaaaacttgcaatttcagtttatatatttcttctttcaaataaaggctggatagacacta |
38101577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 300415 - 300748
Alignment:
| Q |
13 |
atcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
300415 |
atcatcaacataaggagtcacccttgcaccaaaccctgttttaaccaaagctctcaatccagattggaagtcagagatgtaaaaatcaaccacatgcctc |
300514 |
T |
|
| Q |
113 |
tgcattgaatnnnnnnnttaaggaaaaatattaaagagttataagtttcatatattaacctgccaaagtccccaaaatatacaatttgcattcttatata |
212 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
300515 |
tgcattgaatagaaaa-ttaaggaaaaata-------------agtttcatatattaaccagccaaagtccccaaaatatacaatttgcattctgatata |
300600 |
T |
|
| Q |
213 |
ggcgtgtctactccacattaaatgagatttgaatccaatcaacactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
300601 |
ggcgtgtctactccacagtaaatgagatttgaatccaatcaatactttcataaaggagcaaatacaatactgccataacatcagacatgaagacatacta |
300700 |
T |
|
| Q |
313 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccacca |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
300701 |
cctaataagggactattcttgatgatcaaagtcaagtaaaagccacca |
300748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 1322641 - 1322541
Alignment:
| Q |
14 |
tcatcaacataaggagtcacccttgcaccaaagcctgttttaaccaatgctctcagtccagattggaagtcagagatgtaaaaatcaaccacatgcctct |
113 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| || || || |||||||| || | ||||| ||||| || ||||||||||||||||||||| |||||| |
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| T |
1322641 |
tcatcaacataaggggtcactcttgctccatgaccagtcttgaccaatgcccttaaaccagactggaaatctgagatgtaaaaatcaaccacacgcctct |
1322542 |
T |
|
| Q |
114 |
g |
114 |
Q |
| |
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| |
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|
| T |
1322541 |
g |
1322541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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