View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13820_low_20 (Length: 293)

Name: NF13820_low_20
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13820_low_20
NF13820_low_20
[»] chr4 (23 HSPs)
chr4 (7-279)||(14113399-14113668)
chr4 (164-217)||(18767937-18767990)
chr4 (174-223)||(28458328-28458377)
chr4 (164-223)||(12595571-12595630)
chr4 (110-223)||(27371212-27371323)
chr4 (170-223)||(31559610-31559663)
chr4 (174-223)||(49896617-49896666)
chr4 (164-223)||(21617254-21617314)
chr4 (110-213)||(33093005-33093106)
chr4 (170-279)||(43001427-43001533)
chr4 (170-213)||(6520780-6520823)
chr4 (179-250)||(5249917-5249984)
chr4 (170-223)||(52895299-52895353)
chr4 (174-223)||(9362630-9362679)
chr4 (174-223)||(37514083-37514132)
chr4 (170-223)||(47288154-47288207)
chr4 (162-211)||(49818875-49818924)
chr4 (174-223)||(54802627-54802676)
chr4 (174-222)||(1140681-1140729)
chr4 (174-250)||(13086071-13086142)
chr4 (198-250)||(17683273-17683320)
chr4 (174-250)||(31657695-31657766)
chr4 (164-223)||(49768258-49768318)
[»] chr7 (18 HSPs)
chr7 (110-223)||(38939866-38939979)
chr7 (164-217)||(1504301-1504354)
chr7 (174-223)||(4225823-4225872)
chr7 (164-223)||(9944186-9944245)
chr7 (174-223)||(3293200-3293249)
chr7 (164-249)||(18856519-18856600)
chr7 (193-250)||(3062379-3062431)
chr7 (174-223)||(43482594-43482643)
chr7 (174-223)||(46532573-46532622)
chr7 (174-223)||(46829550-46829599)
chr7 (182-222)||(6109930-6109970)
chr7 (164-223)||(21559869-21559929)
chr7 (171-223)||(31785418-31785470)
chr7 (183-223)||(36352544-36352584)
chr7 (182-267)||(39029890-39029971)
chr7 (165-213)||(40227108-40227156)
chr7 (164-223)||(46812845-46812905)
chr7 (169-250)||(48062105-48062182)
[»] chr1 (19 HSPs)
chr1 (164-250)||(21433341-21433423)
chr1 (174-223)||(50824812-50824861)
chr1 (174-223)||(51436722-51436771)
chr1 (173-223)||(46281507-46281557)
chr1 (174-223)||(47721480-47721529)
chr1 (174-223)||(47728472-47728521)
chr1 (174-250)||(48624925-48624996)
chr1 (170-209)||(6257915-6257954)
chr1 (110-224)||(31433560-31433672)
chr1 (162-213)||(35196264-35196315)
chr1 (174-217)||(41507145-41507188)
chr1 (192-223)||(45417843-45417874)
chr1 (170-223)||(7275614-7275667)
chr1 (174-223)||(26967280-26967329)
chr1 (170-223)||(27533431-27533484)
chr1 (170-223)||(30745058-30745111)
chr1 (170-223)||(30766509-30766562)
chr1 (170-222)||(29877370-29877422)
chr1 (174-250)||(32915023-32915094)
[»] chr3 (11 HSPs)
chr3 (173-223)||(27718736-27718786)
chr3 (170-223)||(9311112-9311165)
chr3 (169-250)||(39629784-39629861)
chr3 (170-213)||(46574338-46574381)
chr3 (173-223)||(29573306-29573356)
chr3 (164-250)||(6178366-6178448)
chr3 (170-223)||(26772440-26772493)
chr3 (170-223)||(52485544-52485597)
chr3 (164-223)||(3518548-3518608)
chr3 (112-179)||(34662115-34662180)
chr3 (164-223)||(54694053-54694113)
[»] chr8 (8 HSPs)
chr8 (174-276)||(12707170-12707269)
chr8 (170-213)||(34694861-34694904)
chr8 (174-223)||(14707294-14707343)
chr8 (174-223)||(36885439-36885488)
chr8 (170-223)||(40517329-40517382)
chr8 (164-250)||(29028901-29028983)
chr8 (193-276)||(31596969-31597049)
chr8 (182-223)||(26000609-26000650)
[»] chr5 (9 HSPs)
chr5 (174-223)||(20770202-20770251)
chr5 (173-223)||(6940100-6940150)
chr5 (173-223)||(9939382-9939432)
chr5 (174-223)||(4098682-4098731)
chr5 (174-223)||(21136334-21136383)
chr5 (114-223)||(3640090-3640197)
chr5 (174-250)||(8675384-8675455)
chr5 (113-224)||(34546486-34546595)
chr5 (169-209)||(34848112-34848152)
[»] chr2 (14 HSPs)
chr2 (169-223)||(17395021-17395076)
chr2 (174-276)||(15269882-15269981)
chr2 (174-223)||(30546321-30546370)
chr2 (174-223)||(34119603-34119652)
chr2 (164-216)||(17264016-17264068)
chr2 (164-223)||(30299707-30299766)
chr2 (170-213)||(42430731-42430774)
chr2 (174-224)||(2130504-2130554)
chr2 (177-223)||(34134725-34134771)
chr2 (170-223)||(36103082-36103136)
chr2 (174-223)||(16199663-16199712)
chr2 (174-223)||(39449069-39449117)
chr2 (179-223)||(2131498-2131542)
chr2 (174-250)||(10711773-10711844)
[»] chr6 (10 HSPs)
chr6 (174-217)||(24980011-24980054)
chr6 (110-223)||(30956143-30956254)
chr6 (164-250)||(17551319-17551401)
chr6 (178-223)||(29180587-29180632)
chr6 (170-223)||(30945885-30945938)
chr6 (170-223)||(31413596-31413649)
chr6 (170-223)||(32295295-32295348)
chr6 (174-250)||(5028217-5028288)
chr6 (192-277)||(13143351-13143433)
chr6 (192-277)||(18141270-18141352)
[»] scaffold0532 (1 HSPs)
scaffold0532 (174-223)||(11035-11084)
[»] scaffold0010 (1 HSPs)
scaffold0010 (174-223)||(134254-134303)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 14113399 - 14113668
Alignment:
Q  7 ttaaacctgaattaactttccctaaaaaatcaaaggaattagcttaattaacttttgaataactgcttaatttttatataatgagctacaaacttaatga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |    
T  14113399 ttaaacctgaattaactttccctaaaaaatcaaaggaattagcttaattacctttcgaataactgcttaatttttatataatgagctacaaacttaatta 14113498  T
Q  107 acaaggtgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaat 206  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||   | ||||||||||| ||||||| ||||||||| |||||||||| ||||    
T  14113499 acaaggtgtgttatttgatctaccttttatatgacaagttatgaaacaac--catagatttgtaaaaaaaagtaagtattgacacgaaaatcaaagcaat 14113596  T
Q  207 agagagataaattaaaaccatgagtaatgtgagtataagagagagttaacgcaaaaattgtcataaaatgatt 279  Q
    ||||||||||| |||||  ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||    
T  14113597 agagagataaagtaaaa-aatgagtaatgtgagtatgagagagggttgacacaaaaattgtcataaaatgatt 14113668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 18767990 - 18767937
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaa 217  Q
    |||| |||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  18767990 atttataaagaaaagtaggtattgacatgaaaaccaaagcaatcgagagataaa 18767937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 28458328 - 28458377
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  28458328 aaaagtaggtattgacacgaaaatcaaagcaatagagagataaagtaaaa 28458377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 12595571 - 12595630
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| ||||| |||||||||||||||| ||||| |||||||||||||||| ||| |||||    
T  12595571 atttataaaggaaagtaggtattgacacgaaaaccaaaacaatagagagagaaagtaaaa 12595630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 27371323 - 27371212
Alignment:
Q  110 aggtgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaataga 209  Q
    ||||||||||||||| | ||  ||||| ||| || ||||||||||||  || |  |||  |||||||||||||||||||||||||||   ||||||||||    
T  27371323 aggtgtgttatttgaacaacaatttatttgagaacttatgagacaaccataaa--tttacaaagaaaagtaggtattgacatgaaaactcaaacaataga 27371226  T
Q  210 gagataaattaaaa 223  Q
    |||| ||| |||||    
T  27371225 gagagaaagtaaaa 27371212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 31559663 - 31559610
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| ||| |||||    
T  31559663 aaagaaaagtaggtattaacacgaaaaccaaaacaatagagagagaaagtaaaa 31559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 49896617 - 49896666
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||| |||||||||| |||||||||| ||||||||||||||| |||||    
T  49896617 aaaagttggtattgacacgaaaatcaaagcaatagagagataaagtaaaa 49896666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 21617314 - 21617254
Alignment:
Q  164 atttgtaaagaaa-agtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||| | ||||||||  || |||||||||||||||||||||||||| |||||    
T  21617314 atttgtaaagaaagaataggtatttgcacgaaaatcaaaacaatagagagataaagtaaaa 21617254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 33093005 - 33093106
Alignment:
Q  110 aggtgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaataga 209  Q
    ||||||||||||||| | ||| |||||| || || |||||||||||  ||  |  |||  ||||||||||||||||||||| ||||| |||||||||| |    
T  33093005 aggtgtgttatttgaacaaccatttatacgataacttatgagacaatagttaa--tttacaaagaaaagtaggtattgacacgaaaaccaaaacaataaa 33093102  T
Q  210 gaga 213  Q
    ||||    
T  33093103 gaga 33093106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 43001427 - 43001533
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtat--aagagagagttaacgcaaaaattgt 267  Q
    |||||||||||  | |||||| |||||||||| |||||||||||||||||| || |||     ||||||||||  || ||| ||||  | ||||||||||    
T  43001427 aaagaaaagtaaattttgacacgaaaatcaaagcaatagagagataaattacaaacat-----atgtgagtataaaaaagaaagttgtcacaaaaattgt 43001521  T
Q  268 cataaaatgatt 279  Q
    ||||||||||||    
T  43001522 cataaaatgatt 43001533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 6520780 - 6520823
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagaga 213  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||    
T  6520780 aaagaaaaataggtgttgacatgaaaaccaaaacaatagagaga 6520823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 5249984 - 5249917
Alignment:
Q  179 taggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||||||||| ||||| |||||||||||||||| ||| ||||| ||    |||||||||||| |||||||    
T  5249984 taggtattgacacgaaaaccaaaacaatagagagagaaagtaaaaaca----taatgtgagtatgagagaga 5249917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 52895353 - 52895299
Alignment:
Q  170 aaagaaaa-gtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| |||| |||||||| |||||||||| ||||||||||||||| |||||    
T  52895353 aaagaaaatgtagatattgacacgaaaatcaaagcaatagagagataaaataaaa 52895299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 9362630 - 9362679
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||  || | |||||||||||||||||||||||| |||||    
T  9362630 aaaagtaggtatttgcacggaaatcaaaacaatagagagataaagtaaaa 9362679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 37514083 - 37514132
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||| ||| || |||||||||| ||||||||||||||| |||||    
T  37514083 aaaagtaggttttggcacgaaaatcaaagcaatagagagataaagtaaaa 37514132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 47288207 - 47288154
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||||| |||| | ||| |||||||||||||||| ||| |||||    
T  47288207 aaagaaaagtaggtatcgacacggaaaccaaaacaatagagagaaaaagtaaaa 47288154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 49818924 - 49818875
Alignment:
Q  162 agatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagaga 211  Q
    |||||| ||||||||||||  |||||||||||||| |||| |||||||||    
T  49818924 agatttataaagaaaagtaaatattgacatgaaaaccaaatcaatagaga 49818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 54802627 - 54802676
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||| |||||    
T  54802627 aaaaataggtattgacacgaaaattaaagcaatagagagataaagtaaaa 54802676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 1140729 - 1140681
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaa 222  Q
    ||||||| ||||||||| ||||| |||||||||||||| ||||| ||||    
T  1140729 aaaagtaagtattgacacgaaaaccaaaacaatagagaaataaaataaa 1140681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 13086142 - 13086071
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||| ||||||  || |||||||||| ||||||||||||||| |||||     |||||||||||||| |||||||    
T  13086142 aaaagttggtatttgcacgaaaatcaaagcaatagagagataaaataaaa-----agtaatgtgagtatgagagaga 13086071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 17683320 - 17683273
Alignment:
Q  198 caaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||||||||||||||||| |||||     ||||||||||||||||||||||    
T  17683320 caaaacaatagagagataaagtaaaa-----agtaatgtgagtataagagaga 17683273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 31657766 - 31657695
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||| |||||| ||| ||||| |||| ||||||||||||||| |||||     |||||||||||||| |||||||    
T  31657766 aaaagttggtatttacacgaaaaccaaagcaatagagagataaagtaaaa-----agtaatgtgagtatgagagaga 31657695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 49768258 - 49768318
Alignment:
Q  164 atttgtaaagaaa-agtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||| | ||||||||  || |||||||||| ||||||||||||||| |||||    
T  49768258 atttgtaaagaaataataggtatttgcacgaaaatcaaagcaatagagagataaagtaaaa 49768318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 38939866 - 38939979
Alignment:
Q  110 aggtgtgttatttgacctaccttttatatgacaag--ttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaata 207  Q
    ||||||||||||||| | || |||||||||||||   ||||||||||||| ||||  ||||||||||||| || |||| |||| |||||||||| |||||    
T  38939866 aggtgtgttatttgaacaacattttatatgacaaaacttatgagacaactataga--tttgtaaagaaaaataagtatagacacgaaaatcaaagcaata 38939963  T
Q  208 gagagataaattaaaa 223  Q
    |||||||||| |||||    
T  38939964 gagagataaagtaaaa 38939979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 1504301 - 1504354
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaa 217  Q
    |||| |||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  1504301 atttataaagaaaagtaggtattgatacgaaaaccaaaacaatagagagataaa 1504354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 4225872 - 4225823
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  4225872 aaaagtaggtattgacacgaaaaccaaaacaatagagagataaagtaaaa 4225823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 9944245 - 9944186
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| |||| ||||||||||||||||| |||||||||||||||| ||||| ||| |||||    
T  9944245 atttataaataaaagtaggtattgacacgaaaatcaaaacaataaagagaaaaagtaaaa 9944186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 3293249 - 3293200
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||  ||||||||||||| ||||||||||||||| |||||    
T  3293249 aaaagtaggtatttgcatgaaaatcaaagcaatagagagataaagtaaaa 3293200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 18856600 - 18856519
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagag 249  Q
    |||| ||||||| ||| |||||||| | |||||||||||||||||||||| ||| ||||| ||    |||||||||||| ||||||    
T  18856600 atttataaagaatagtgggtattgagaagaaaatcaaaacaatagagagagaaagtaaaaaca----taatgtgagtattagagag 18856519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 3062431 - 3062379
Alignment:
Q  193 aaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||| |||||||||||||||||||| |||||     ||||||||||||||||||||||    
T  3062431 aaaaccaaaacaatagagagataaagtaaaa-----agtaatgtgagtataagagaga 3062379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 43482643 - 43482594
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||  || ||||| |||||||||||||||||||| |||||    
T  43482643 aaaagtaggtatttgcacgaaaaccaaaacaatagagagataaagtaaaa 43482594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 46532622 - 46532573
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| |||||||| ||| ||||| |||||||||||||||||||| |||||    
T  46532622 aaaattaggtatttacacgaaaaccaaaacaatagagagataaagtaaaa 46532573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 46829599 - 46829550
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||| ||| || |||||||||| ||||||||||||||| |||||    
T  46829599 aaaagtaggttttggcacgaaaatcaaagcaatagagagataaagtaaaa 46829550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 6109930 - 6109970
Alignment:
Q  182 gtattgacatgaaaatcaaaacaatagagagataaattaaa 222  Q
    ||||||||| ||||| |||||||||||||||||||| ||||    
T  6109930 gtattgacacgaaaaccaaaacaatagagagataaagtaaa 6109970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 21559929 - 21559869
Alignment:
Q  164 atttgtaaagaaa-agtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||| | ||||||||  || |||||||||| ||||||||||||||| |||||    
T  21559929 atttgtaaagaaataataggtatttgcacgaaaatcaaagcaatagagagataaagtaaaa 21559869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 31785418 - 31785470
Alignment:
Q  171 aagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||| | ||||||||||||| |||| ||||||||||| ||| |||||    
T  31785418 aagaaaagtaagaattgacatgaaaaccaaaccaatagagagagaaagtaaaa 31785470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 36352544 - 36352584
Alignment:
Q  183 tattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  36352544 tattgacacgaaaatcaaagcaatagagagataaagtaaaa 36352584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 39029971 - 39029890
Alignment:
Q  182 gtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagagagttaacgcaaaaattgt 267  Q
    |||||| |||||||| ||||  |||||||||||||||||||| ||    |||||||||||| ||||| ||||  | ||||||||||    
T  39029971 gtattggcatgaaaaccaaagtaatagagagataaattaaaaaca----taatgtgagtatgagagaaagttgtcacaaaaattgt 39029890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 40227108 - 40227156
Alignment:
Q  165 tttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagaga 213  Q
    |||||||||||||  || ||||||||| ||||||||||||||| |||||    
T  40227108 tttgtaaagaaaataagatattgacataaaaatcaaaacaataaagaga 40227156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 46812845 - 46812905
Alignment:
Q  164 atttgtaaagaaa-agtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||| | ||||||||  ||  ||||||||||||||||||||||||| |||||    
T  46812845 atttgtaaagaaagaataggtatttgcacaaaaatcaaaacaatagagagataaagtaaaa 46812905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 48062182 - 48062105
Alignment:
Q  169 taaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||||||  |||||||||||  |||| |||||||||||||||| ||| ||||| ||    |||| |||||||||||||||    
T  48062182 taaagaaaatgaggtattgacacaaaaaccaaaacaatagagagagaaagtaaaaaca----taatatgagtataagagaga 48062105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 21433341 - 21433423
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||||||||||||||||||| |||||| ||| |||| ||||||||||| ||| ||||| ||    ||||||||||||||||||||    
T  21433341 atttgtaaagaaaagtaggtatcgacatggaaaccaaagcaatagagagagaaaataaaaaca----taatgtgagtataagagaga 21433423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 50824861 - 50824812
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  50824861 aaaagtaggtattgacatgaaaaccaaagcaatagagagataaagtaaaa 50824812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 51436722 - 51436771
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  51436722 aaaagtaggtattgacatgaaaaccaaaacaataaagagataaagtaaaa 51436771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 46281557 - 46281507
Alignment:
Q  173 gaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||| |||||    
T  46281557 gaaaagtaggttttggcatgaaaatcaaagcaatagagagataaagtaaaa 46281507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 47721529 - 47721480
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||||    
T  47721529 aaaagtaagtattgacacgaaaatcaaagcaatagagagataaagtaaaa 47721480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 47728521 - 47728472
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| |||||    
T  47728521 aaaagtaagtattgacacgaaaatcaaagcaatagagagataaagtaaaa 47728472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 48624996 - 48624925
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    ||||||| |||||  ||||||||||||| ||||||||||||||| |||||     | ||||||||||||||||||||    
T  48624996 aaaagtatgtatttgcatgaaaatcaaagcaatagagagataaagtaaaa-----aataatgtgagtataagagaga 48624925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 6257915 - 6257954
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaataga 209  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  6257915 aaagaaaagtagttattgacatgaaaatcaaaataataga 6257954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 31433672 - 31433560
Alignment:
Q  110 aggtgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaataga 209  Q
    ||||||||||||||| | ||  ||| ||||| || ||||||||||||  ||||  |||  |||| || ||||||||||||| |||||  |||| ||||||    
T  31433672 aggtgtgttatttgaacaactatttgtatgataacttatgagacaaccataga--tttacaaagtaatgtaggtattgacacgaaaactaaaataataga 31433575  T
Q  210 gagataaattaaaac 224  Q
    ||||||||| |||||    
T  31433574 gagataaataaaaac 31433560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 35196315 - 35196264
Alignment:
Q  162 agatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagaga 213  Q
    |||||| ||||||||| || ||||||||| ||||||||||| ||||||||||    
T  35196315 agatttataaagaaaattaagtattgacaggaaaatcaaaataatagagaga 35196264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 41507145 - 41507188
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaa 217  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||    
T  41507145 aaaagtaggtattgacatgaaaaccaaaataatagatagataaa 41507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 45417874 - 45417843
Alignment:
Q  192 gaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||||||||||||||||||    
T  45417874 gaaaatcaaaacaatagagagataaattaaaa 45417843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 7275614 - 7275667
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| |||||||| | ||||||| ||||| |||||||||||||| |||||    
T  7275614 aaagaaaattaggtatttatatgaaaaccaaaataatagagagataaactaaaa 7275667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 26967329 - 26967280
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||  |||| ||| |||||||||||||||||||| |||||    
T  26967329 aaaagtaggtatttgcatggaaaccaaaacaatagagagataaaataaaa 26967280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 27533431 - 27533484
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||  |||||||||||| ||||||||||||||| ||||| ||| |||||    
T  27533431 aaagaaaatgaggtattgacataaaaatcaaaacaataaagagagaaagtaaaa 27533484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30745111 - 30745058
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| || |||||||||  |||| |||||||||||||||||||| |||||    
T  30745111 aaagaaaattatgtattgacacaaaaaccaaaacaatagagagataaagtaaaa 30745058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30766562 - 30766509
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| || |||||||||  |||| |||||||||||||||||||| |||||    
T  30766562 aaagaaaattatgtattgacacaaaaaccaaaacaatagagagataaagtaaaa 30766509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 29877422 - 29877370
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaa 222  Q
    |||||||| || ||||||||| ||||| |||||||||||||||| ||| ||||    
T  29877422 aaagaaaattatgtattgacacgaaaaccaaaacaatagagagagaaagtaaa 29877370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 32915023 - 32915094
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||| ||||||  || ||||| |||||||||||||||||||| |||||     |||||||||||||| |||||||    
T  32915023 aaaagttggtatttgcacgaaaaccaaaacaatagagagataaagtaaaa-----agtaatgtgagtatgagagaga 32915094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 27718736 - 27718786
Alignment:
Q  173 gaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  27718736 gaaaagtaggttttggcatgaaaatcaaaacaatagagagataaaataaaa 27718786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 9311165 - 9311112
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||    
T  9311165 aaagaaaagtaggtattgacacgaaaaccaaaacaatagggagagaaagtaaaa 9311112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 39629784 - 39629861
Alignment:
Q  169 taaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||||||| |  ||||||||| ||||||||||||||||||||| ||| ||||| ||    |||||||||||| |||||||    
T  39629784 taaagaaaagaaattattgacataaaaatcaaaacaatagagagagaaagtaaaaaca----taatgtgagtatgagagaga 39629861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 46574381 - 46574338
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagaga 213  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  46574381 aaagaaaagtaggtattgacacggaaaccaaaacaatagagaga 46574338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 29573306 - 29573356
Alignment:
Q  173 gaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||| |||||    
T  29573306 gaaaagtaggttttggcacgaaaatcaaagcaatagagagataaagtaaaa 29573356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 6178366 - 6178448
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    ||||||||||||||   ||||||||||  ||||||||| ||||||||||| ||| ||||| ||    |||||||||||| |||||||    
T  6178366 atttgtaaagaaaaagtggtattgacacaaaaatcaaagcaatagagagagaaagtaaaaaca----taatgtgagtatgagagaga 6178448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 26772493 - 26772440
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| || ||||||||| ||||||||||| |||||||||| ||| |||||    
T  26772493 aaagaaaactatgtattgacacgaaaatcaaaataatagagagagaaaataaaa 26772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 52485597 - 52485544
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||| |||||| || ||||| |||| ||||||||||||||| |||||    
T  52485597 aaagaaaagtatgtattggcacgaaaaccaaagcaatagagagataaagtaaaa 52485544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 3518548 - 3518608
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagag-agataaattaaaa 223  Q
    ||||||||||||||  |||||||||||  ||||||||| |||||||| ||||||| |||||    
T  3518548 atttgtaaagaaaataaggtattgacacaaaaatcaaagcaatagagaagataaaataaaa 3518608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 34662180 - 34662115
Alignment:
Q  112 gtgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagt 179  Q
    |||||||||||||   ||||||||||||| || ||||| ||||||  || ||||||||||||||||||    
T  34662180 gtgtgttatttgaataaccttttatatgataacttatgggacaac--tatagatttgtaaagaaaagt 34662115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 54694053 - 54694113
Alignment:
Q  164 atttgtaaagaaa-agtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||| | ||||||||  || |||||||||| ||||||||||||||| |||||    
T  54694053 atttgtaaagaaagaataggtatttgcacgaaaatcaaagcaatagagagataaagtaaaa 54694113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 12707269 - 12707170
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagag--agttaacgcaaaaattgtcata 271  Q
    |||||| |||||| ||| ||||| ||||||||||||||||||||||||||     ||||| |||||||| ||||||  ||||  ||||||| ||||||||    
T  12707269 aaaagttggtatttacacgaaaaccaaaacaatagagagataaattaaaa-----agtaacgtgagtatgagagagaaagttgtcgcaaaagttgtcata 12707175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 34694904 - 34694861
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagaga 213  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  34694904 aaagaaaattaggtattgacatgaaaatcaaagcaatagagaga 34694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 14707294 - 14707343
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||| |||||||||| |||||| |||||||| |||||    
T  14707294 aaaagtaggtattgacaagaaaatcaaagcaatagggagataaagtaaaa 14707343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 36885439 - 36885488
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||| |||||    
T  36885439 aaaagtaggtattgacacgaaaatcaaagcaataaagagataaagtaaaa 36885488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 40517382 - 40517329
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||| |||||||| |||||||||| ||||||| ||||||| |||||    
T  40517382 aaagaaaagtagatattgacacgaaaatcaaagcaatagaaagataaaataaaa 40517329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 29028901 - 29028983
Alignment:
Q  164 atttgtaaagaaaag-taggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    ||||||||||||||  ||||||||  ||  ||||||||| |||||||||||||||||||||     | ||||||||||||||||||||    
T  29028901 atttgtaaagaaaaaataggtatttgcacaaaaatcaaagcaatagagagataaattaaaa-----aataatgtgagtataagagaga 29028983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 31597049 - 31596969
Alignment:
Q  193 aaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtat--aagagagagttaacgcaaaaattgtcataaaatg 276  Q
    |||| |||||||||||||||||||| |||||     ||||||||||||||   ||||||||||  | |||||||||||||||||||    
T  31597049 aaaaccaaaacaatagagagataaagtaaaa-----agtaatgtgagtatgagagagagagttgtcacaaaaattgtcataaaatg 31596969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 26000650 - 26000609
Alignment:
Q  182 gtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||| |||||||||| ||||||||||||||| |||||    
T  26000650 gtattgacacgaaaatcaaagcaatagagagataaaataaaa 26000609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 20770251 - 20770202
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  20770251 aaaagtaggtattgacacgaaaatcaaagcaatagagagataaagtaaaa 20770202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 6940100 - 6940150
Alignment:
Q  173 gaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||| |||||    
T  6940100 gaaaagtaggttttggcacgaaaatcaaagcaatagagagataaagtaaaa 6940150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 9939382 - 9939432
Alignment:
Q  173 gaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||| |||||    
T  9939382 gaaaagtaggttttggcacgaaaatcaaagcaatagagagataaagtaaaa 9939432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 4098731 - 4098682
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||| |||||| | ||||||||||||||| |||||||||| |||||    
T  4098731 aaaagtagatattgatacgaaaatcaaaacaattgagagataaagtaaaa 4098682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 21136383 - 21136334
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||||||| | || |||| |||||||||||||||||||| |||||    
T  21136383 aaaagtaggtatttatataaaaaccaaaacaatagagagataaagtaaaa 21136334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 3640090 - 3640197
Alignment:
Q  114 gtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaag-aaaagtaggtattgacatgaaaatcaaaacaatagagag 212  Q
    ||||||||||| ||||| ||||  |||||| ||||| ||||||  ||   |||| ||||| |||||| ||||||  ||||||||||||| ||||||| ||    
T  3640090 gtgttatttgaactaccatttagttgacaacttatgtgacaaccata---atttataaagaaaaagtgggtatttgcatgaaaatcaaagcaatagaaag 3640186  T
Q  213 ataaattaaaa 223  Q
    ||||| |||||    
T  3640187 ataaagtaaaa 3640197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 8675384 - 8675455
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||| ||||||  || |||||||||| ||||||||||||||| |||||     |||||||||||||| |||||||    
T  8675384 aaaagttggtatttgcacgaaaatcaaagcaatagagagataaagtaaaa-----agtaatgtgagtatgagagaga 8675455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 34546595 - 34546486
Alignment:
Q  113 tgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagag 212  Q
    |||||||||||| | || |||| |||||||| || || ||||||| || |  | | |||||||||  |||||||||||| ||||||||| |||||||||     
T  34546595 tgtgttatttgaacaactttttgtatgacaatttttgggacaactataaa--tgtataaagaaaatgaggtattgacataaaaatcaaatcaatagagat 34546498  T
Q  213 ataaattaaaac 224  Q
    | ||| ||||||    
T  34546497 agaaagtaaaac 34546486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 34848112 - 34848152
Alignment:
Q  169 taaagaaaagtaggtattgacatgaaaatcaaaacaataga 209  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  34848112 taaagaaaagtaggtattgatatgaaaataaaaataataga 34848152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 17395021 - 17395076
Alignment:
Q  169 taaagaaaa-gtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  17395021 taaagaaaacgtaggtattgacacgaaaatcaaaacaatagaaagataaagtaaaa 17395076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 15269981 - 15269882
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtat--aagagagagttaacgcaaaaattgtcata 271  Q
    |||||||||||||  || |||||||||| ||||||||||||||| |||||     |||||||||| |||  |||||| ||||  | ||||||||||||||    
T  15269981 aaaagtaggtatttgcacgaaaatcaaagcaatagagagataaagtaaaa-----agtaatgtgaatatgaaagagaaagttgtcacaaaaattgtcata 15269887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 30546321 - 30546370
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||  |||||||| |||||||||||||||||||| |||||    
T  30546321 aaaagtaggtatttgcatgaaaaccaaaacaatagagagataaagtaaaa 30546370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 34119603 - 34119652
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||| |||||    
T  34119603 aaaagtaagtattcacacgaaaatcaaaacaatagagagataaagtaaaa 34119652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 17264016 - 17264068
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataa 216  Q
    |||||||||||||| || ||||||||||| ||||||||| |||| ||||||||    
T  17264016 atttgtaaagaaaattatgtattgacatggaaatcaaaataataaagagataa 17264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 30299766 - 30299707
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| |||||||||||||||||||| |  ||||||||| ||| ||||||||||| |||||    
T  30299766 atttttaaagaaaagtaggtattgatactaaaatcaaagcaacagagagataaagtaaaa 30299707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 42430774 - 42430731
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagaga 213  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  42430774 aaagaaaagtaggtattgacacggaaaccaaaacaatagagaga 42430731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 2130554 - 2130504
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaac 224  Q
    |||||||||||||||||| ||||  |||| |||||||||||||| ||||||    
T  2130554 aaaagtaggtattgacataaaaactaaaataatagagagataaagtaaaac 2130504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 34134725 - 34134771
Alignment:
Q  177 agtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||| |||||| |||||||||| ||||||||||||||| |||||    
T  34134725 agtaggttttgacacgaaaatcaaagcaatagagagataaagtaaaa 34134771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 36103082 - 36103136
Alignment:
Q  170 aaagaaaag-taggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    ||||||||| |||||||| ||| ||||||||||||||||| |||||||| |||||    
T  36103082 aaagaaaaggtaggtatttacaggaaaatcaaaacaatagggagataaagtaaaa 36103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 16199663 - 16199712
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||| ||||| |||||||||| ||||||||||||||| |||| |||||    
T  16199663 aaaagttggtatcgacatgaaaaccaaaacaatagagaggtaaagtaaaa 16199712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 39449069 - 39449117
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| ||||||||| || |||||||||||||||||||||||||| |||||    
T  39449069 aaaaataggtattg-cacgaaaatcaaaacaatagagagataaagtaaaa 39449117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 2131542 - 2131498
Alignment:
Q  179 taggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||| ||| ||||| |||||||||||||| |||||    
T  2131542 taggtattgacatggaaaccaaaataatagagagataaagtaaaa 2131498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 10711844 - 10711773
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||| |||||||| ||| ||||| |||| ||||||||||||||| |||||     |||||||||||||| |||||||    
T  10711844 aaaaataggtatttacacgaaaaccaaagcaatagagagataaagtaaaa-----agtaatgtgagtatgagagaga 10711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 24980054 - 24980011
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaa 217  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  24980054 aaaagtatgtattgacatgaaaatcaaagtaatagagagataaa 24980011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 30956254 - 30956143
Alignment:
Q  110 aggtgtgttatttgacctaccttttatatgacaagttatgagacaactgtagagatttgtaaagaaaagtaggtattgacatgaaaatcaaaacaataga 209  Q
    |||| |||||||||| | ||| ||||||||| || ||||| ||||||  ||||  |||  |||||||| ||| ||||| || ||| |||||| |||||||    
T  30956254 aggtttgttatttgaacaaccatttatatgaaaacttatgggacaaccataga--tttacaaagaaaattagatattggcacgaagatcaaatcaataga 30956157  T
Q  210 gagataaattaaaa 223  Q
    |||||||| |||||    
T  30956156 gagataaagtaaaa 30956143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 17551319 - 17551401
Alignment:
Q  164 atttgtaaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||| |||||||||  ||| |||||||  |||| |||||||||||||||||||| ||||| ||    |||||||||||| |||||||    
T  17551319 atttataaagaaaatgagggattgacacaaaaaccaaaacaatagagagataaagtaaaaaca----taatgtgagtatgagagaga 17551401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 29180587 - 29180632
Alignment:
Q  178 gtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||||||||||  |||| |||||||||||||| |||||    
T  29180587 gtaggtattgacatgaaaactaaaataatagagagataaagtaaaa 29180632  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30945938 - 30945885
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||| ||||| || |||||||||| ||||||| ||||||| |||||    
T  30945938 aaagaaaagtagatattggcacgaaaatcaaatcaatagatagataaagtaaaa 30945885  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 31413649 - 31413596
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||| |||||||||| | | |||||||||| ||||||||||||||| |||||    
T  31413649 aaagaatagtaggtattaatacgaaaatcaaagcaatagagagataaagtaaaa 31413596  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 32295348 - 32295295
Alignment:
Q  170 aaagaaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||||||||| |||||| |  ||||||||||||||| ||||||||| |||||    
T  32295348 aaagaaaagtagatattgatacaaaaatcaaaacaataaagagataaaataaaa 32295295  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 5028217 - 5028288
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagaga 250  Q
    |||||||| |||| ||| ||||| |||| ||||| ||||||||| |||||     ||||||||||||||||||||||    
T  5028217 aaaagtagatatttacacgaaaaccaaagcaataaagagataaagtaaaa-----agtaatgtgagtataagagaga 5028288  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 13143351 - 13143433
Alignment:
Q  192 gaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagag--agttaacgcaaaaattgtcataaaatga 277  Q
    |||||||||| ||||||||||||||| |||||     |||||||||||||| ||||||  ||||   ||||||||||||| |||||||    
T  13143351 gaaaatcaaagcaatagagagataaagtaaaa-----agtaatgtgagtatgagagagaaagttgttgcaaaaattgtcacaaaatga 13143433  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 18141270 - 18141352
Alignment:
Q  192 gaaaatcaaaacaatagagagataaattaaaaccatgagtaatgtgagtataagagag--agttaacgcaaaaattgtcataaaatga 277  Q
    |||||||||| ||||||||||||||| |||||     |||||||||||||| ||||||  ||||  | ||||| ||||||||||||||    
T  18141270 gaaaatcaaagcaatagagagataaagtaaaa-----agtaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatga 18141352  T

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Target: scaffold0532 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 11084 - 11035
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||||| ||||||  || |||||||||||||||||||||||||| |||||    
T  11084 aaaagtgggtatttgcacgaaaatcaaaacaatagagagataaagtaaaa 11035  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 134254 - 134303
Alignment:
Q  174 aaaagtaggtattgacatgaaaatcaaaacaatagagagataaattaaaa 223  Q
    |||| |||||||||||| ||||| |||||||||| ||||||||| |||||    
T  134254 aaaaataggtattgacacgaaaaccaaaacaataaagagataaagtaaaa 134303  T

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