View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13820_low_21 (Length: 276)
Name: NF13820_low_21
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_21 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 2369037 - 2369282
Alignment:
| Q |
18 |
agaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagtt |
117 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369037 |
agaggtcatcattttgagctattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagtt |
2369136 |
T |
|
| Q |
118 |
ttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattct |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369137 |
ttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattct |
2369236 |
T |
|
| Q |
218 |
tattaagccacgtttgtcttcgaattgctatgaaattatgtgatct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2369237 |
tattaagccacgtttgtcttcgaattgctatgaaattatgtgatct |
2369282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 2363291 - 2363533
Alignment:
| Q |
18 |
agaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| || ||||||||| ||||||||||||||||||||| |
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| T |
2363291 |
agaggtaatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagtt |
2363390 |
T |
|
| Q |
118 |
ttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattct |
217 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2363391 |
ttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgaatgaaacttttggattaagcaacaccaaaacaactcctcttgagattct |
2363490 |
T |
|
| Q |
218 |
tattaagccacgtttgtcttcgaattgctatgaaattatgtga |
260 |
Q |
| |
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||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2363491 |
tataaagccacgtttgtcttcgaattgttatgaaattatgtga |
2363533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 261
Target Start/End: Original strand, 2307536 - 2307769
Alignment:
| Q |
28 |
attttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattc |
127 |
Q |
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|||||| |||||| ||||||||| |||||||||| || ||||| ||||| ||| |||| ||||||||| ||||||| | | | ||||||||||||||||| |
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|
| T |
2307536 |
attttgtgctattgccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcatttcattctagctagttttttgcattc |
2307635 |
T |
|
| Q |
128 |
ctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagcca |
227 |
Q |
| |
|
|||||| ||| |||||||| | ||||| | ||||||||| |||| | ||||||||||| ||||| ||| | ||||||||| ||||||| ||||| ||| |
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| T |
2307636 |
ctttgatatcttaaatccaacccctgaacttgttgatatgagtgaatcctttggattaacaaacactaaagctactcctcttaagattctcattaaacca |
2307735 |
T |
|
| Q |
228 |
cgtttgtcttcgaattgctatgaaattatgtgat |
261 |
Q |
| |
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| ||||||| ||||| |||||||| ||||||| |
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| T |
2307736 |
catttgtctatcaattgttatgaaatcatgtgat |
2307769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 2340207 - 2340450
Alignment:
| Q |
18 |
agaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagtt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||| | || || ||||| || ||||| ||||||||| ||||||| || | ||||||| |
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| T |
2340207 |
agaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcatttcaccctagctagtt |
2340306 |
T |
|
| Q |
118 |
ttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattct |
217 |
Q |
| |
|
|||||||||||||||| ||| |||||||| || ||| || ||||||||| |||| | ||||||| ||| || ||||| | ||||| ||||||||||| |
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|
| T |
2340307 |
ttttgcattcctttgatatcttaaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacgaattccaaagctactccacttgagattct |
2340406 |
T |
|
| Q |
218 |
tattaagccacgtttgtcttcgaattgctatgaaattatgtgat |
261 |
Q |
| |
|
||||| |||||||||||| ||||| ||||| ||||||||| |
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| T |
2340407 |
cattaaaccacgtttgtctcacaattgttatgagtttatgtgat |
2340450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 2261307 - 2261160
Alignment:
| Q |
27 |
cattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcatt |
126 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||| || || |||||||| || ||||| ||||| ||| | |||||||||||||||| |||||| || | |
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|
| T |
2261307 |
cattttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacact |
2261208 |
T |
|
| Q |
127 |
cctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaa |
174 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||| ||||||||||||||| |
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| T |
2261207 |
cctttgaaattgtaaatggatctagtgaacctgttgatatgactgaaa |
2261160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 2351660 - 2351870
Alignment:
| Q |
18 |
agaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagtt |
117 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||||||| | || || | ||| || ||||| |||||||| |||||||| ||| | || |||| |
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|
| T |
2351660 |
agaggtaatcattttgaactactaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagtt |
2351759 |
T |
|
| Q |
118 |
ttttgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattct |
217 |
Q |
| |
|
|||||||||||||||| ||| |||||||| || | || | |||||||||||||| ||||||||| | ||||||||| | ||||| ||||||||||| |
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|
| T |
2351760 |
ttttgcattcctttgatatcttaaatccaacacccggacttgttgatatgactgaagaatttggattagcaaacaccaaagctactccacttgagattct |
2351859 |
T |
|
| Q |
218 |
tattaagccac |
228 |
Q |
| |
|
||||| |||| |
|
|
| T |
2351860 |
cattaaaccac |
2351870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 2357988 - 2358216
Alignment:
| Q |
30 |
tttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcct |
129 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| ||||| || | ||| || ||||| || ||||| ||||||||| |||||||| |||||||||||| | |
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|
| T |
2357988 |
tttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcat |
2358087 |
T |
|
| Q |
130 |
ttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacg |
229 |
Q |
| |
|
|||||||| | || |||| ||||| |||||||||||||| ||| |||||||| || | ||||| | || || ||||||||||| |||| ||| | |
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|
| T |
2358088 |
ttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatg |
2358187 |
T |
|
| Q |
230 |
tttgtcttcgaattgctatgaaattatgt |
258 |
Q |
| |
|
||||||| |||||||| |||| ||||| |
|
|
| T |
2358188 |
tttgtctgttaattgctacgaaactatgt |
2358216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 14711375 - 14711303
Alignment:
| Q |
18 |
agaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttc |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| ||||| || || || ||||| || |||| ||||| |
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|
| T |
14711375 |
agaggtaatcattttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttgcccttc |
14711303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 14753439 - 14753374
Alignment:
| Q |
25 |
atcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttc |
90 |
Q |
| |
|
||||||||||| | |||||||||||| |||| ||||| ||||| || ||||| || |||||||||| |
|
|
| T |
14753439 |
atcattttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttggccttc |
14753374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 4305996 - 4306222
Alignment:
| Q |
25 |
atcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgca |
124 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| ||||| |||||||| || | |||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
4305996 |
atcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatggtgcatttatctttggctagttttttgca |
4306095 |
T |
|
| Q |
125 |
ttcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaag |
224 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||| | |||||| ||| ||||||| || ||||||||||||||| |
|
|
| T |
4306096 |
ttcctttgaaatctcaaaggcatcagctgaacctattgatatgactgaagcttttggaatcaccaaccacaaggcaactccactagagattcttattaag |
4306195 |
T |
|
| Q |
225 |
ccacgtttgtcttcgaattgctatgaa |
251 |
Q |
| |
|
|| |||||| |||| ||||| |||||| |
|
|
| T |
4306196 |
cctcgtttgccttctaattgttatgaa |
4306222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 5804274 - 5804059
Alignment:
| Q |
21 |
ggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaactttggctagttttt |
120 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||||| | || || ||||| | ||||| ||||||||||||||||| ||| | |||||||||| |
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|
| T |
5804274 |
ggtaatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttt |
5804175 |
T |
|
| Q |
121 |
tgcattcctttgaaatcgtaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttat |
220 |
Q |
| |
|
||||||||||||| ||| |||||||| || ||||| |||||||||||||||| ||||||||||| || | |||| | ||||| ||||| ||||| || |
|
|
| T |
5804174 |
tgcattcctttgatatcttaaatccaacacctgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcat |
5804075 |
T |
|
| Q |
221 |
taagccacgtttgtct |
236 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
5804074 |
taaaccacgtttgtct |
5804059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 624 - 689
Alignment:
| Q |
25 |
atcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttc |
90 |
Q |
| |
|
||||||||||| | |||||||||||| |||| ||||| ||||| || ||||| || |||||||||| |
|
|
| T |
624 |
atcattttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttggccttc |
689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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