View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_3 (Length: 483)
Name: NF13820_low_3
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 4 - 396
Target Start/End: Original strand, 31785934 - 31786329
Alignment:
| Q |
4 |
gagaagaagcaaaccagggtaattgtgtgtggcagtttcatccctcaagatgttgcaatcaagataaaaaagaaaacaaatcgaagagttgagatattgg |
103 |
Q |
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| T |
31785934 |
gagaagaagcaaaccagggtaattgtgtgtggcagtttcatccctcaagatgttgcaatcaagataaaaaagaaaacaaatcgaagagttgagatattgg |
31786033 |
T |
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| Q |
104 |
acatacaagatttgagtgaaaacaatgctgaaaatatagaagaacagaaaccaagcactagcccccaaaagccaattgaaagaaatatgtttggattgat |
203 |
Q |
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| T |
31786034 |
acatacaagatttgagtgaaaacaatgctgaaaatatagaagaacagaaaccaagcactagcccccaaaagccaattgaaagaaatatgtttggattgat |
31786133 |
T |
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| Q |
204 |
agaaacaaagagagaaatgcctgccctcaaccatagagttcaatacacaacaaattgccacttttaaatcattagaataacactaaattttgtaattttg |
303 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31786134 |
agaaacaaagagagaaatgcctgccctcaatcatagagttcaatacacaacaaattgccacttttaaatcattagaataacactaaattttgtaattttg |
31786233 |
T |
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| Q |
304 |
atc-ttctagtgataatttttcat--tttatactcatatttttctaagtgtgcttaatatacttggaaatatagatcttatttacttttgttcatg |
396 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||| |||||| | |||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
31786234 |
atcattctagtgataatttttcataatttatactcatatttttgtaagtgggtttaatatacttgaaaagatagatcttatttacttttgttcatg |
31786329 |
T |
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