View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13820_low_5 (Length: 455)

Name: NF13820_low_5
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13820_low_5
NF13820_low_5
[»] chr3 (11 HSPs)
chr3 (84-180)||(2940936-2941032)
chr3 (354-449)||(2940666-2940761)
chr3 (354-450)||(2945602-2945698)
chr3 (249-293)||(2940823-2940867)
chr3 (96-176)||(2946694-2946774)
chr3 (96-182)||(2945862-2945948)
chr3 (367-426)||(2941262-2941321)
chr3 (367-441)||(2946456-2946531)
chr3 (358-440)||(2946030-2946111)
chr3 (17-56)||(2941219-2941258)
chr3 (124-176)||(2941516-2941568)
[»] chr2 (4 HSPs)
chr2 (86-177)||(21192501-21192592)
chr2 (394-449)||(21192791-21192846)
chr2 (367-426)||(21192357-21192416)
chr2 (101-176)||(21192130-21192205)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 2941032 - 2940936
Alignment:
Q  84 attaaccctgtgataccaaaaattacctttaattttaatcttctgaattaaatttcatccaatgccatccactcgacactcaatgaattaccttatc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2941032 attaaccctgtgataccaaaaattacctttaattttaatcttctgaattaaatttcatccaatcccatccactcgacactcaatgaattaccttatc 2940936  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 2940761 - 2940666
Alignment:
Q  354 ataatttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctg 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  2940761 ataatttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcgtctcataatttcatcaaactcttcttttctg 2940666  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 354 - 450
Target Start/End: Complemental strand, 2945698 - 2945602
Alignment:
Q  354 ataatttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctgt 450  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  2945698 ataatttttcctctcttgattttagggtttgatttgcctcaagcttataaataggttcaaccccatctcataatatcatcaaactcttcttttctgt 2945602  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 2940867 - 2940823
Alignment:
Q  249 agcgacaattattcatgaatttcatcgtcaatccttatccttatg 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2940867 agcgacaattattcatgaatttcatcgtcaatccttatccttatg 2940823  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 2946774 - 2946694
Alignment:
Q  96 ataccaaaaattacctttaattttaatcttctgaattaaatttcatccaatgccatccactcgacactcaatgaattacct 176  Q
    ||||||||| | ||||||| | |||||||||| |||||||||||||||||| ||| ||||||| || ||||||||||||||    
T  2946774 ataccaaaagtgacctttactattaatcttctaaattaaatttcatccaatcccacccactcggcattcaatgaattacct 2946694  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 2945948 - 2945862
Alignment:
Q  96 ataccaaaaattacctttaattttaatcttctgaattaaatttcatccaatgccatccactcgacactcaatgaattaccttatcgg 182  Q
    |||| |||||||||||||| | |||||||| | ||||||||||||| |||| ||| ||||| | |||| | ||||||||||||||||    
T  2945948 atacaaaaaattacctttactcttaatcttataaattaaatttcatgcaatcccacccacttggcacttagtgaattaccttatcgg 2945862  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 426
Target Start/End: Complemental strand, 2941321 - 2941262
Alignment:
Q  367 tcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataa 426  Q
    |||||||| || |||||| || ||||||||||||||||||||||||||  ||||||||||    
T  2941321 tcttgattctagggtttggttcgcctcaagcttataaataggttcaactccatctcataa 2941262  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 2946531 - 2946456
Alignment:
Q  367 tcttgattataaggtttgatttgcctcaagcttataaataggttc-aacctcatctcataatttcatcaaactctt 441  Q
    |||||||| || || ||| |||||||||||||||||||||||||| |||| ||||||||||  ||||||| |||||    
T  2946531 tcttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctctt 2946456  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 2946111 - 2946030
Alignment:
Q  358 tttttcctctcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataatttcatcaaactct 440  Q
    |||| ||| |||||||| || |||||| |||||||||||| ||||| ||||||||||| ||||||||||  ||||||| ||||    
T  2946111 ttttacctttcttgattctagggtttggtttgcctcaagcgtataa-taggttcaaccccatctcataacatcatcaagctct 2946030  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 2941258 - 2941219
Alignment:
Q  17 caccaagctctacttttctgctgttgcaatacctaaatat 56  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  2941258 caccaagctctacttttctgctgctgcaatacctacatat 2941219  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 2941568 - 2941516
Alignment:
Q  124 ttctgaattaaatttcatccaatgccatccactcgacactcaatgaattacct 176  Q
    |||| ||||||||||||| |||| ||| ||||||| || ||||||||||||||    
T  2941568 ttctaaattaaatttcattcaatcccacccactcggcattcaatgaattacct 2941516  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 21192501 - 21192592
Alignment:
Q  86 taaccctgtgataccaaaaattacctttaattttaatcttctgaattaaatttcatccaatgccatccactcgacactcaatgaattacctt 177  Q
    ||||||||| ||||||||||||||||||| | ||| |||||| ||||||||||||||||||  ||  ||||   ||||||||||||||||||    
T  21192501 taaccctgttataccaaaaattacctttactcttagtcttctaaattaaatttcatccaatctcactcacttagcactcaatgaattacctt 21192592  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 394 - 449
Target Start/End: Original strand, 21192791 - 21192846
Alignment:
Q  394 aagcttataaataggttcaacctcatctcataatttcatcaaactcttcttctctg 449  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  21192791 aagcttataaataggtacaaccccatctcataatttcatcaaactcttcttttctg 21192846  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 426
Target Start/End: Original strand, 21192357 - 21192416
Alignment:
Q  367 tcttgattataaggtttgatttgcctcaagcttataaataggttcaacctcatctcataa 426  Q
    |||||||| || |||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  21192357 tcttgattctagggtttggttttcctcaagcttataaataggttcaaccccatctcataa 21192416  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 21192130 - 21192205
Alignment:
Q  101 aaaaattacctttaattttaatcttctgaattaaatttcatccaatgccatccactcgacactcaatgaattacct 176  Q
    |||||||||||||| | | |||||| | |||||||||||||||||| ||| ||||| | || ||||||||||||||    
T  21192130 aaaaattacctttactctgaatcttataaattaaatttcatccaatcccacccactaggcattcaatgaattacct 21192205  T

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