View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13820_low_7 (Length: 421)
Name: NF13820_low_7
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 10383930 - 10383726
Alignment:
| Q |
20 |
cttataccatccatgctaactgctgtgaagatctcagaagcaaagttcatgacatgaagattgttctacaagattggatccggtttcgaaatggcgcgca |
119 |
Q |
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| T |
10383930 |
cttataccatccatgctaactgctgtgaagatctcagaagcaaagttcatgacatgaagattgttctacaagattggatccggtttcgaaatggcgtgca |
10383831 |
T |
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| Q |
120 |
gaagaacaatgcaacagaaatagtggctttgaggtggccacaaaagtgcataggatgaagatacggttctcaagttttcccagataattcatattaagaa |
219 |
Q |
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| T |
10383830 |
gaagaacaatgcaacagaaaaagtggctttgaggtggccacagaagtgcattggatgaagatacagctctcaagttttcacagagaattcatattaagat |
10383731 |
T |
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| Q |
220 |
aaaca |
224 |
Q |
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||||| |
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| T |
10383730 |
aaaca |
10383726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 10380742 - 10380403
Alignment:
| Q |
22 |
tataccatccatgctaactgctgtgaagatctcagaagcaaagttcatgacatgaagattgttctacaagattggatccggtttcgaaatggcgcgcaga |
121 |
Q |
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| T |
10380742 |
tataccatccatgctaactgttgtgatgatctcacaagcaaagttcatgacatgacgattgttctagatgattggatccgctttagaaaacgtgtgaaaa |
10380643 |
T |
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| Q |
122 |
agaacaatgcaacagaaatagtggctttgaggtggccacaaaagtgcataggatgaagat----------------acggttctcaagttttcccagata |
205 |
Q |
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| T |
10380642 |
acaacaatgcaacagaaaaaatgactttgaggtggccacagaagtgcataggatgaagatatacatagaagaacaaacagatcttaagttttcacagaca |
10380543 |
T |
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| Q |
206 |
attcatattaagaaaaacagattacagatttctctttatcttagcaggaagatttatctttaagt---------ttaaa-gtaaaccatgttttggtgaa |
295 |
Q |
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| T |
10380542 |
attcatgttaagaaaaacagcttgcagatttctttttatctgaacaagaaggtttcacttttagttcaactcaattaaatgtaaaccatcctttggtgaa |
10380443 |
T |
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| Q |
296 |
aaatgctaagcatatggtttggtacattgttataggatag |
335 |
Q |
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| T |
10380442 |
aaatgctaagcatatggtttgatactttgtaataggatag |
10380403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 17732363 - 17732283
Alignment:
| Q |
21 |
ttataccatccatgctaactgctgtgaagatctcagaagcaaagttcatgacatgaagattgttctacaagattggatccg |
101 |
Q |
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| T |
17732363 |
ttataccatccatgctagctgctgtgatgacctccgaagcaaagttcatgacttgacaattgttctaaatgattggatccg |
17732283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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