View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13820_low_8 (Length: 390)
Name: NF13820_low_8
Description: NF13820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13820_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 24461485 - 24461131
Alignment:
| Q |
1 |
aaagaggagaacgaagaattttcagttggtaagggaaatccgacttcagcttgtaattcgaactatatgccacgttcccttnnnnnnnntaaaatatgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
24461485 |
aaagaggagaacgaagaattttcagttggtaagggaaatccgacttcagcttgtaattcgaactatatgcgacgttcccttaaaaaaaaaaacatatgcc |
24461386 |
T |
|
| Q |
101 |
aggtcattctcgagttttcgttgagagtaattcaaactatttgccacaatacatggcatggctaataatgggtttaagaggcacaataacctgttcttcg |
200 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| | ||| |||||||||||||||| |||||||| |
|
|
| T |
24461385 |
agatcattcttgagttttcgttg-gagtaattcgaactatttgccacaatacatcg---------------gttaaagaggcacaataacc-gttcttcg |
24461303 |
T |
|
| Q |
201 |
ctttcttgtgcatca----catatgaattatttatagggtgacatttgtccaaagagtataaatacataatcattgcttgatttcataactcaaaaatat |
296 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
24461302 |
ctttcttgtgcatcattgacatatgaattatttatagggtgacatttgtccaaagagtataaatacataatcattgcttgatttcataactaaaaaatgt |
24461203 |
T |
|
| Q |
297 |
tgtggtaatgaaatgagcaagatgagattagattttacatcaccttgctaatggagagtgttaaaatggttg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24461202 |
tgtggtaatgaaatgagcaagatgagattagattttacatcaccttgctaatggagagtgttaaaatggttg |
24461131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 24479585 - 24479535
Alignment:
| Q |
318 |
atgagattagattttacatcaccttgctaatggagagtgttaaaatggttg |
368 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
24479585 |
atgagattatattttgcttcaccttgctaatggagagtgttaaaatagttg |
24479535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University