View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13821_high_1 (Length: 297)

Name: NF13821_high_1
Description: NF13821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13821_high_1
NF13821_high_1
[»] chr7 (3 HSPs)
chr7 (135-293)||(37248789-37248936)
chr7 (1-84)||(37238967-37239050)
chr7 (1-80)||(37248655-37248734)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 135 - 293
Target Start/End: Original strand, 37248789 - 37248936
Alignment:
Q  135 tctgatatcggatctagcgtacctctgtcttttgattagtttttgatgtgtctagattttcaatgtttgtggtaatcatcagtttaattaatgaaatgtt 234  Q
    |||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37248789 tctgatatcggatctagcgtacctctgtctttt-----------gatgtgtctagattttcaatgtttgtggtaatcatcagtttaattaatgaaatgtt 37248877  T
Q  235 ttagtttgggtcaaatcttatctaactgtgttattgtttcctcttgaaatgagtataat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37248878 ttagtttgggtcaaatcttatctaactgtgttattgtttcctcttgaaatgagtttaat 37248936  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37238967 - 37239050
Alignment:
Q  1 acgatatcgaccatgatttgaagctctaggttgatctatggttttataataatgtaatggggtctaataaattaaagtgtctgc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37238967 acgatatcgaccatgatttgaagctctaggttgatctatggttttataataatgtaatggggtctaataaattaaggtgtctgc 37239050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37248655 - 37248734
Alignment:
Q  1 acgatatcgaccatgatttgaagctctaggttgatctatggttttataataatgtaatggggtctaataaattaaagtgt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37248655 acgatatcgaccatgatttgaagctctaggttgatctatggttttataataatgtaatggggtctaataaattaaagtgt 37248734  T

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