View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13822_high_1 (Length: 684)

Name: NF13822_high_1
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13822_high_1
NF13822_high_1
[»] chr2 (8 HSPs)
chr2 (17-591)||(17595740-17596316)
chr2 (144-345)||(10194016-10194217)
chr2 (190-345)||(34427032-34427187)
chr2 (608-676)||(17595684-17595752)
chr2 (145-343)||(22564637-22564834)
chr2 (144-340)||(24185507-24185703)
chr2 (236-345)||(22379331-22379440)
chr2 (236-345)||(27608049-27608159)
[»] chr7 (3 HSPs)
chr7 (144-345)||(37246977-37247178)
chr7 (144-340)||(10012748-10012944)
chr7 (145-344)||(45088595-45088793)
[»] chr8 (2 HSPs)
chr8 (144-343)||(12658189-12658388)
chr8 (239-339)||(19195946-19196046)
[»] chr4 (2 HSPs)
chr4 (170-340)||(43096126-43096296)
chr4 (144-321)||(9047442-9047619)
[»] chr1 (3 HSPs)
chr1 (170-340)||(45992318-45992488)
chr1 (144-340)||(19280593-19280789)
chr1 (236-340)||(12213151-12213255)
[»] scaffold0126 (2 HSPs)
scaffold0126 (144-340)||(43862-44058)
scaffold0126 (375-407)||(44095-44127)
[»] chr3 (3 HSPs)
chr3 (170-340)||(22721139-22721309)
chr3 (144-340)||(14960266-14960461)
chr3 (292-345)||(41517773-41517826)
[»] scaffold0664 (1 HSPs)
scaffold0664 (144-340)||(2048-2244)
[»] scaffold0301 (1 HSPs)
scaffold0301 (236-345)||(4893-5002)
[»] chr5 (2 HSPs)
chr5 (144-267)||(21747419-21747542)
chr5 (236-340)||(4151791-4151895)


Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 17596316 - 17595740
Alignment:
Q  17 acattttagtctagaattgcaagactaactaatttatcttttgttctttgcatatgtttgcatgtagatttttattaggggagagaaggtaatgcttaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17596316 acattttagtctagaattgcaagactaactaatttatcttttgttctttgcatatgtttgcatgtagatttttattaggggagagaaggtaatgcttaga 17596217  T
Q  117 tgagtaattttcacgtcatttcatgtcatatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17596216 tgagtaattttcacgtcatttcatgtcatatgaggttttttgtgtctcacttttatagagaaggtaatgcatctgctgatggctttgcaaacctaggtct 17596117  T
Q  217 ttctttgttatcctctgagttattttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagattt 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  17596116 ttctttgttatcctctgagttattttagtcagatattatccctgatttcattagaatagattacactggaaataagttgggaatgcctaatttcagattt 17596017  T
Q  317 aacaccttttaaaaaagttttggtatagttcctattttctattttctac-nnnnnnnggtttatattgaattgatgctctttgaatctattt-nnnnnnn 414  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||||            
T  17596016 aacaccttttaaaaaggttttggtatagtttctattttctattttctactcttttttggtttatattgaattgatgctctttgaatctatttaaaaaaaa 17595917  T
Q  415 gaaagtacgtagatttctagggtataaattaaattaagtgacgacaaaaataattttctttaaaataaaatcccttgttattgattttttgttttgctaa 514  Q
    |||||||||||||||||||||| |||||| || ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17595916 gaaagtacgtagatttctagggcataaatcaagttaagggacgacgaaaataattttgtttaaaataaaatcccttgttattgattttttgttttgctaa 17595817  T
Q  515 tgaatgcattgtaannnnnnnnaaaagcacatgaagctcaaagggtaacaaaaggttttatcaagtaacaataatgt 591  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17595816 tgaatgcattgtaatttttttaaaaagcacatgaagctcaaagggtaacaaaaggttttatcaagtaacaataatgt 17595740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 144 - 345
Target Start/End: Complemental strand, 10194217 - 10194016
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| |  |||||||||||| ||||||||||| ||| | ||||||||||||    
T  10194217 atatgaggtttgttgtgtctcacatttatagagaaggtaatgcatgtgctgatagtcttgcaaacctagatctttctttgtcatcttttgagttattttg 10194118  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtata 343  Q
    ||| |||| ||||||||||||||| |||| ||| |||| | | |||| ||| | ||||   ||||| |||||||||||||||| |||| |||||||||||    
T  10194117 gtctgatactatccctgatttcattaggggagagtacaataggaataggttagaaatgttcaatttcagatttaacaccttttgaaaaggttttggtata 10194018  T
Q  344 gt 345  Q
    ||    
T  10194017 gt 10194016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 190 - 345
Target Start/End: Complemental strand, 34427187 - 34427032
Alignment:
Q  190 tgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttggtcagatattatccctgatttcatgagggtagattacactggaaat 289  Q
    ||||||| || |||||||||||  ||||||||| | |||   ||||||||||||||| |||| ||||||||||||||| | || ||| |||| | | |||    
T  34427187 tgctgatagccttgcaaacctacatctttctttatcatctcttgagttattttggtctgatactatccctgatttcattaagggagagtacaataggaat 34427088  T
Q  290 aagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagt 345  Q
    | ||||||||| || ||||| | |||||||||||||||||||||||||||| ||||    
T  34427087 aggttgggaatacccaatttcaaatttaacaccttttaaaaaagttttggtttagt 34427032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 608 - 676
Target Start/End: Complemental strand, 17595752 - 17595684
Alignment:
Q  608 gtaacaataatgtgtatatacaagtaaatgaataatacctttctatcccatccaatgtttagtataatc 676  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  17595752 gtaacaataatgtatatatacaaagaaatgaataatacctttctatcccatccaatgtttagtacaatc 17595684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 145 - 343
Target Start/End: Original strand, 22564637 - 22564834
Alignment:
Q  145 tatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttgg 244  Q
    |||||||||| | ||||||||| ||||||||||||| |||| || ||||||  || |||| || || ||||| ||| |||  || |||||| | ||||||    
T  22564637 tatgaggtttgtggtgtctcacatttatagagaagggaatgtttgtgctgacagccttgcgaatcttggtctctctatgtcttcttctgaggtgttttgg 22564736  T
Q  245 tcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtata 343  Q
    |||||| |||  ||||||||||| || | ||| |||||| | |||| |||||||||||  || || |||||||||| ||||| |||| |||||||||||    
T  22564737 tcagattttactcctgatttcattagtggagagtacactaggaataggttgggaatgcaaaactttagatttaaca-cttttgaaaaggttttggtata 22564834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 144 - 340
Target Start/End: Complemental strand, 24185703 - 24185507
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||| | ||||| ||| | ||||| ||||| |||| || ||||||| || |||||||| | || || ||||| |  || | ||| ||||||||    
T  24185703 atatgagatttgtggtgtcacacatatatagggaagggaatgtttgtgctgatagccttgcaaacatgggcctctctttctcttcttttgatttattttg 24185604  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||||||||||||||||||||| || |||| ||| |||| | | |||| |||||| ||||| ||||| || ||||||| ||||| |||| ||||||||    
T  24185603 gtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaacttttgaaaaggttttggt 24185507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 22379440 - 22379331
Alignment:
Q  236 ttattttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagtt 335  Q
    ||||||||||| |||| | ||||||||||||| |||| ||| |||||| | |||| |||||||||||| || || ||||| |||||||| | |||| |||    
T  22379440 ttattttggtctgatagtgtccctgatttcattaggggagagtacactaggaataggttgggaatgcccaactttagattcaacaccttctgaaaaggtt 22379341  T
Q  336 ttggtatagt 345  Q
    |||| |||||    
T  22379340 ttggcatagt 22379331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 27608049 - 27608159
Alignment:
Q  236 ttattttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacacctt-ttaaaaaagt 334  Q
    ||||||||||| |||| | ||||||||||||| |||| ||| |||||| | |||| | |||||||||| || || ||||| |||||||| | ||||| ||    
T  27608049 ttattttggtctgatagtgtccctgatttcattaggggagagtacactaggaataggctgggaatgcccaactttagattcaacaccttctgaaaaacgt 27608148  T
Q  335 tttggtatagt 345  Q
    ||||| |||||    
T  27608149 tttggcatagt 27608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 144 - 345
Target Start/End: Original strand, 37246977 - 37247178
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||||||||||||||| ||  |||||||||||||||||| || ||| |||||| ||||||||||||||||| |||||   |||||||| ||||||||    
T  37246977 atatgaggttttttgtgtcccatatttatagagaaggtaatgtttgtgcagatggccttgcaaacctaggtcttactttgccttcctctgaattattttg 37247076  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtata 343  Q
    |||||||||||||| ||||||||| |||| ||| |||||| | |||  ||||| |||| | ||||| | ||| |||| ||||| |||| |||||||||||    
T  37247077 gtcagatattatccttgatttcattaggggagaatacactaggaattggttggaaatgtccaatttcatattcaacatcttttgaaaaggttttggtata 37247176  T
Q  344 gt 345  Q
    ||    
T  37247177 gt 37247178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 144 - 340
Target Start/End: Original strand, 10012748 - 10012944
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||| | ||||| ||| | ||||| ||||| ||||||| ||||||| || |||||||||| || || ||||  |  || | ||| ||||||||    
T  10012748 atatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacctgggcctctcttactcttcttttgatttattttg 10012847  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||||||||||||||||||||| || |||| ||| |||| | | |||| |||||| ||||| ||||| || ||||||||||||| |||| ||||||||    
T  10012848 gtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaccttttgaaaaggttttggt 10012944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 145 - 344
Target Start/End: Original strand, 45088595 - 45088793
Alignment:
Q  145 tatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttgg 244  Q
    |||||| |||||||| || ||| | ||||| ||||| |||| || ||||||| |||| ||||||||  |||||||||| |  || | | |||||||||||    
T  45088595 tatgagattttttgtatcacacatctatagggaagggaatgtttgtgctgatagctt-gcaaacctgagtctttctttttcttcttttcagttattttgg 45088693  T
Q  245 tcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatag 344  Q
     | ||||||||| |||||||||| | || ||| |||| | |||||| |||||| |||||| ||||  ||||||||| ||||| |||| ||||||||||||    
T  45088694 actgatattatctctgatttcattacgggagagtacatttgaaataggttgggtatgcctgattttcgatttaacatcttttgaaaaggttttggtatag 45088793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 12658388 - 12658189
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||||||||||| ||  ||||||||||||||||||||| |||  ||||| ||||||||||||||||| |||||   |||||||| ||||||||    
T  12658388 atatgagattttttgtgtcccatatttatagagaaggtaatgcttatgcaaatggccttgcaaacctaggtcttactttgccttcctctgaattattttg 12658289  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtata 343  Q
    |||||||||||||  | ||||||| |||| ||| || | | | |||  ||||| |||| | || || | ||||||||||||||||||| |||||||||||    
T  12658288 gtcagatattatctttaatttcattaggggagagtatattaggaatgggttggcaatgtccaaattcaaatttaacaccttttaaaaaggttttggtata 12658189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 19196046 - 19195946
Alignment:
Q  239 ttttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttg 338  Q
    |||||||| ||| |||| ||||||||||| || | ||| |||||| | |||| |||||| ||||| || || ||||| | |||||||| |||| ||||||    
T  19196046 ttttggtctgatgttattcctgatttcattagaggagagtacactaggaataggttgggtatgcccaactttagattcaccaccttttgaaaaggttttg 19195947  T
Q  339 g 339  Q
    |    
T  19195946 g 19195946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 170 - 340
Target Start/End: Complemental strand, 43096296 - 43096126
Alignment:
Q  170 tatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttggtcagatattatccctgatttcatga 269  Q
    ||||||||||| ||||||| ||||||| || |||||||||||||||| |||||    || | ||| |||||||||||||||||||||||||||||||| |    
T  43096296 tatagagaagggaatgcttgtgctgatagccttgcaaacctaggtctctctttcacttcttttgatttattttggtcagatattatccctgatttcatta 43096197  T
Q  270 gggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||| ||| ||||   |||||| |||||| ||||| ||||| || |||||||||| || |||| ||||||||    
T  43096196 ggggagagtacatcagaaataggttgggtatgcccaatttcaggtttaacacctattgaaaaggttttggt 43096126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 321
Target Start/End: Complemental strand, 9047619 - 9047442
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||||||| | |||||||||  |||||||||||| ||||||| ||||||  || |||| || || ||||| ||| |||  || |||||| | |||||    
T  9047619 atatgaggtttgtggtgtctcacaattatagagaagggaatgcttgtgctgacagccttgcgaatcttggtctctctatgtcttcttctgaggtgttttg 9047520  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacac 321  Q
    |||||||  ||  ||||||||||| || | ||| |||||| | |||| |||| ||||||| || || |||||||||||    
T  9047519 gtcagattatactcctgatttcattagaggagagtacactaggaataggttgagaatgcccaactttagatttaacac 9047442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 170 - 340
Target Start/End: Original strand, 45992318 - 45992488
Alignment:
Q  170 tatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttggtcagatattatccctgatttcatga 269  Q
    ||||||||||| ||||||| ||||||| || |||||||||||||||| |||||    || |   | |||||||||||||||||||||||||||||||| |    
T  45992318 tatagagaagggaatgcttgtgctgatagccttgcaaacctaggtctctctttcacttctttaaatttattttggtcagatattatccctgatttcatta 45992417  T
Q  270 gggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||| ||| ||||   | ||||||||||| ||||| ||||| ||||||||||||| || |||| ||||||||    
T  45992418 ggggagagtacatcaggaataagttgggtatgcccaatttcagatttaacacctattgaaaaggttttggt 45992488  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 144 - 340
Target Start/End: Complemental strand, 19280789 - 19280593
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||| | ||||| ||| | ||||| ||||  ||||||| ||||||| || |||||||||| | ||| |||||    || | ||| ||||||||    
T  19280789 atatgagatttgtggtgtcacacatatatagggaagagaatgcttgtgctgatagccttgcaaaccttgatctctctttcacttcttttgatttattttg 19280690  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    |||||||| |||||||||||| || |||| ||| |||| | | |||| |||||| ||||| ||||| || |||||||||||||||||| ||||||||    
T  19280689 gtcagatactatccctgattttattaggggagagtacattaggaatatgttgggtatgcccaatttcaggtttaacaccttttaaaaaggttttggt 19280593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 12213151 - 12213255
Alignment:
Q  236 ttattttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagtt 335  Q
    |||||||||||||||||||||| |||||| || |||| ||| |||| | | |||| |||||| ||||| ||| | || ||||||| ||||| |||| |||    
T  12213151 ttattttggtcagatattatccatgattttattaggggagagtacattaggaatatgttgggtatgcccaatatcaggtttaacatcttttgaaaaggtt 12213250  T
Q  336 ttggt 340  Q
    |||||    
T  12213251 ttggt 12213255  T

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Target: scaffold0126 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 144 - 340
Target Start/End: Original strand, 43862 - 44058
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||| | ||||| ||| | ||||| ||||| ||||||| ||||||| || |||||||||| || || ||||| |  || | ||| ||||||||    
T  43862 atatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacctgggcctctctttctcttcttttgatttattttg 43961  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||||||||||||||||||||| || |||| ||| |||| | | |||| |||||| ||||| ||||| || ||||||||||||| |||| ||||||||    
T  43962 gtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaccttttgaaaaggttttggt 44058  T

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Target: scaffold0126; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 44095 - 44127
Alignment:
Q  375 tttatattgaattgatgctctttgaatctattt 407  Q
    |||||||||||||||||||||||| ||||||||    
T  44095 tttatattgaattgatgctctttgcatctattt 44127  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 340
Target Start/End: Complemental strand, 22721309 - 22721139
Alignment:
Q  170 tatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttggtcagatattatccctgatttcatga 269  Q
    ||||||||||| ||||||| ||||||| || ||||||| |||||||| |||||    || | ||| |||||||||||||||||||||||||||||||| |    
T  22721309 tatagagaagggaatgcttgtgctgatagccttgcaaatctaggtctctctttcacttcttttgatttattttggtcagatattatccctgatttcataa 22721210  T
Q  270 gggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||| ||| ||||   | |||| |||||| ||||| ||||| || |||||||||| || |||| ||||||||    
T  22721209 ggggagagtacatcaggaataggttgggtatgcccaatttcaggtttaacacctattgaaaaggttttggt 22721139  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 340
Target Start/End: Original strand, 14960266 - 14960461
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||| | ||||| ||| | ||||| ||||| ||||||| ||||||| || |||||||||| || || ||||| |  || | ||| ||||||||    
T  14960266 atatgagatttatggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacctgggcctctctttctcttcttttgatttattttg 14960365  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    |||||||||||| || ||||| || |||| ||| |||| | | |||| |||||| ||||| ||||| || ||||||  ||||| |||| ||||||||    
T  14960366 gtcagatattat-ccagattttattaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacgtcttttgaaaaggttttggt 14960461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 41517826 - 41517773
Alignment:
Q  292 gttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagt 345  Q
    |||||||||||||||||| ||||||  || ||||| |||| |||||||||||||    
T  41517826 gttgggaatgcctaatttcagattttgcaacttttgaaaaggttttggtatagt 41517773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 144 - 340
Target Start/End: Original strand, 2048 - 2244
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||| ||| | ||||| ||| | ||||| ||||| ||||||| ||||||| || |||||||| | || || ||||  |  || | ||| ||||||||    
T  2048 atatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgcaaacatgggcctctcttactcttcttttgatttattttg 2147  T
Q  244 gtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt 340  Q
    ||||||||||||||||||||| || |||| ||| |||| | | |||| |||||| ||||| ||||| || ||||||||||||| |||| ||||||||    
T  2148 gtcagatattatccctgattttattaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaccttttgaaaaggttttggt 2244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 5002 - 4893
Alignment:
Q  236 ttattttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagtt 335  Q
    ||||||||||| |||| | ||||||||||||| |||| ||| |||||| | |||| | ||||||||||||| || ||||||||||| || | |||| |||    
T  5002 ttattttggtctgatagtgtccctgatttcattaggggagagtacactaggaataggctgggaatgcctaactttagatttaacactttctgaaaaggtt 4903  T
Q  336 ttggtatagt 345  Q
    |||| |||||    
T  4902 ttggcatagt 4893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 21747419 - 21747542
Alignment:
Q  144 atatgaggttttttgtgtctcacttttatagagaaggtaatgcttctgctgatggctttgcaaacctaggtctttctttgttatcctctgagttattttg 243  Q
    ||||||||||| | ||||||||| ||||||||||||| ||||||| ||||||  || |||| || || ||||| ||| |||  || |||||| | |||||    
T  21747419 atatgaggtttgtggtgtctcacatttatagagaagggaatgcttgtgctgacagccttgcgaatcttggtctctctatgtcttcttctgaggtgttttg 21747518  T
Q  244 gtcagatattatccctgatttcat 267  Q
    |||||||  ||  |||||||||||    
T  21747519 gtcagattatactcctgatttcat 21747542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 4151791 - 4151895
Alignment:
Q  236 ttattttggtcagatattatccctgatttcatgagggtagattacactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagtt 335  Q
    |||||||||||||||||||||| ||||||||| | || |||  |||   |||||| |||||  ||| | ||||| || |||||||||| || |||| |||    
T  4151791 ttattttggtcagatattatccttgatttcattaagggagagcacatgagaaataggttggatatgtccaatttcaggtttaacacctattgaaaaggtt 4151890  T
Q  336 ttggt 340  Q
    |||||    
T  4151891 ttggt 4151895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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