View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_high_20 (Length: 234)
Name: NF13822_high_20
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6490279 - 6490498
Alignment:
| Q |
1 |
atcatgacattgcttacagaatcgagccactctccgtttaactttcaataagccttcagtatgtcttctttactaattaccatacaccatttggcacatt |
100 |
Q |
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| T |
6490279 |
atcatgacattgcttacagaatcgagccactctccgtttaactttcaataagccttcagtatgtcttctatactaattaccatacaccatttggcacatt |
6490378 |
T |
|
| Q |
101 |
ttctttatatatgatcacaatgtcattcatgctgaatcattagagacaaaaggtagatgggttttctatgatttaagtaaggatctgcggtgaagttgat |
200 |
Q |
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| T |
6490379 |
ttctttatatatgatcacaatgtcattcatgctgaatcattagagacaaaaggtagatgggttttctatgatttaagtaaggatctgcggtgaagttgat |
6490478 |
T |
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| Q |
201 |
ttagtgaaccaaactgtttt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
6490479 |
ttagtgaaccaaactgtttt |
6490498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 38700394 - 38700185
Alignment:
| Q |
9 |
attgcttacagaatcgagccactctccgtttaactttcaataagccttcagtatgtcttctttactaattaccatacaccatttggcacattttctttat |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||| |
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| T |
38700394 |
attgcttacagaatcgagccactctccatttaactttcaataagtcttcagtatgtcttcttcactagttactatataccatttggcacattttctttat |
38700295 |
T |
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| Q |
109 |
atatgatcacaatgtcattcatgctgaatcattagagacaaaaggtagatgggttttctatgatttaagtaaggatctgcggtgaagttgatttagtgaa |
208 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||| |
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| T |
38700294 |
atatgatcacaatgttattcatgctgaatcattagaaacaaaaggtagatgggttttctatgatttaagtaaggatctgtggtgaaggttatttagagaa |
38700195 |
T |
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| Q |
209 |
ccaaactgtt |
218 |
Q |
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| T |
38700194 |
ccaaactgtt |
38700185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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