View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_high_6 (Length: 486)
Name: NF13822_high_6
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 2382124 - 2382580
Alignment:
| Q |
1 |
gatgaaattctctcggcaggtggagttgtggcagaacatcatgcatcctgttcgtaggttttggatttccattgccacacgttttggaattcgtaaaact |
100 |
Q |
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| T |
2382124 |
gatgaaattctctcggcaggtggagttgtggcagaacatcatgcatcctgttcgtaggttttggatttccattgccacacgttttggaattcgtaaaact |
2382223 |
T |
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| Q |
101 |
ggtaataattcaaaacatgtttggtcctttttctgtatttttggttacatagtacatgtttggttttgatgtttgcaaattcttcaaacaatagcatgtg |
200 |
Q |
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| T |
2382224 |
ggtaataattcaaaacatgtttggtcctttttctgtatttttggttacatagtacatgtttggttttgatgtttgcaaa-----------atagcatgtg |
2382312 |
T |
|
| Q |
201 |
ctgagttttgcacgttaattgtaacatattttgatccactacgagtttgacaaaatcacagggaatttgtgaattattgtaacatatttggattcacaca |
300 |
Q |
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| T |
2382313 |
ctgagttttgcacgttaattgtaacatattttgatccactacgagtttgacagaatcacagggaatttgtgaattattgtaacatatttggattcacaca |
2382412 |
T |
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| Q |
301 |
ccgtttgattttgtt-aaactaacaagaagaatagtttttatcaaagataacgacaaccaatcgtgattctggtaaactcatcgtcaatacaaatatatt |
399 |
Q |
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| T |
2382413 |
ctgtttgatattgttaaaactaacaagaagaatagtttttat-taagataacaacaaccaatcgtgattctgataaactcatcgtcaatacaaatatatt |
2382511 |
T |
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| Q |
400 |
atatcattttcaatgaatgcactttgggtgattaaaactttgaaataaacatgttaatttggacaagaa |
468 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382512 |
atatcattttcaatgaatgcactttgagtgattaaaactttgaaataaacatgttaatttggacaagaa |
2382580 |
T |
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