View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13822_high_7 (Length: 484)
Name: NF13822_high_7
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 31 - 468
Target Start/End: Original strand, 16365667 - 16366104
Alignment:
| Q |
31 |
ctgacacgtcattgaaacattataataatttcaaaaaatatatttattgaatataatcacgtgtcattgccatcagatataacttcaatttgaagtgtta |
130 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16365667 |
ctgacacgttattggcacattataataatttcaaaaaataaatttattgaatataatcacgtgtcattgccatcagatataacttcaatttgaagtgtta |
16365766 |
T |
|
| Q |
131 |
gtgctataatacactagataaattaaattttttgatttgtttgtaggtacctaaatttgcttttatttgttagtcctataaatgataaaaagagagaagt |
230 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
16365767 |
gtgctataatatactaaataaattaaattttttgatttgtttgtaggtacatgaatttgcttttatttgttagtcttataaatgataacaagagagaaat |
16365866 |
T |
|
| Q |
231 |
tggtccataaatgaaataattaaaaggtgaattgtttttggtaccttttcatccttgagaataggagcttgtagccttgtaatgacttctgttgcatcat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16365867 |
tggtccataaatgaaataattaaaaggtgaattgtttttggtaccttttcatccttgagaataggagcttgtagccttgtaatgacttctgttgcatcat |
16365966 |
T |
|
| Q |
331 |
atatcactgtaactttaccattttctctatccttcatttttacagtcctgtttaacaaattggatgagaattacactaaggtatatgaattagcaatata |
430 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16365967 |
atatcactgcaactttaccattttctctatccttcatttttacagtcctgcttaacaaattggatgagaattacactaaggtatatgaattagcaatata |
16366066 |
T |
|
| Q |
431 |
attattgaaagtatattaagccaattgtataaactttc |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16366067 |
attattgaaagtatattaagccaattgtataaactttc |
16366104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 16355466 - 16355523
Alignment:
| Q |
280 |
catccttgagaataggagcttgtagccttgtaatgacttctgttgcatcatatatcac |
337 |
Q |
| |
|
||||||||| | |||||||||| ||||||| |||||||||| |||||||||||||||| |
|
|
| T |
16355466 |
catccttgacagtaggagcttggagccttgaaatgacttcttttgcatcatatatcac |
16355523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 52932489 - 52932390
Alignment:
| Q |
280 |
catccttgagaataggagcttgtagccttgtaatgacttctgttgcatcatatatcactgtaactttaccattttctctatccttcatttttacagtcct |
379 |
Q |
| |
|
||||||||| ||||||||||| || | || |||||||||| ||||||||||||||||| | ||||| ||| | | | ||||||||| || |||||||| |
|
|
| T |
52932489 |
catccttgacaataggagctttgagtcctgaaatgacttcttttgcatcatatatcactttgactttcccactctttgtatccttcacgttaacagtcct |
52932390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University