View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13822_low_1 (Length: 1243)
Name: NF13822_low_1
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 786; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 786; E-Value: 0
Query Start/End: Original strand, 346 - 1187
Target Start/End: Original strand, 20204385 - 20205226
Alignment:
| Q |
346 |
gtttgtatgaccggaaagaagcatcaaactgttactaccagcaaagtaactcactcacatgcaatttcaaaagctaagaactaaactaaacacaaaagag |
445 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20204385 |
gtttgcatgaccggaaagaagcatcaaactgttactaccagcaaagtaactcactcacatgcaatttcaaaagctaagaactaaactaaacacaaaagag |
20204484 |
T |
|
| Q |
446 |
tagttaacacgtaaagcactaatcatcattacacataattgcatgcatgaaaacattgccgccaagtattcccttcaaacattgaaacctatagacccca |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20204485 |
tagttaacacgtaaagcactaatcatcattacacataattgcatgcatgaaaacattgccgccaagtattcccttcaaacattgaaacctataaacccca |
20204584 |
T |
|
| Q |
546 |
atcacatgtttaatcttcaaaatcactagctccattcaaaagattcacttcccaatacaaaaaatcccagcattaaataacacatcaatgcaataaccat |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20204585 |
atcacatgtttaatcttcaaaatcactagctccattcaaaagattcacttcccaatacaaaaaatcccaacattaaataacacatcaatgcaataaccat |
20204684 |
T |
|
| Q |
646 |
aacccacataaactaagcaacaacaagttcaaaatccattccatttcaacacaatgcgtaccacagtatgaactagaaactattcgatgaatttccccaa |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20204685 |
aacccacataaactaagcaacaacaagttcaaaatccattccatttcaacacaatgcgtaccacagtatgaactagaaactattcgatgaatttccccaa |
20204784 |
T |
|
| Q |
746 |
attttcaaaaccctaatttcacccattttcgtggaatttccccaaattcgtacaattctagggtttcgtgaaaatgtgaagaaacaaacaattgaagaaa |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20204785 |
attttcaaaaccctaatttcacccattttcgtggaatttccccaaattcgtacaattctagggtttcgtgaaaatgtgaagaaacaaacaattgaagaaa |
20204884 |
T |
|
| Q |
846 |
agagaaaacaaacacctgaacgtagaaattattcggtgaatttggaaattagggcacaattgaattgaagaacacgaaatccgttttctagggttttggn |
945 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20204885 |
agagaaaacaaacacctgaacgtagaaattattcggtgaatttggaaattagggcacaattgaattgaagaacacgaaatccgttttctagggttttgga |
20204984 |
T |
|
| Q |
946 |
nnnnnnnnnnngagggatatgatacgaaatctctttgtgtatgaaaacgacgtcgaattagccctagaaatgcaaggttttcatggtgattgaagtgtga |
1045 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20204985 |
aaaaataaaaagagggatatgatacgaaatctcttggtgtatgaaaacgacgtcgaattagccctagaaatgcaaggttttcatggtgattgaagtgtga |
20205084 |
T |
|
| Q |
1046 |
gttgtgaaatttcgaggaaattttctctctctataattgtgagtttctctctctagaagatgaagaaacgaagggtgattttgttatttgatggtgtttc |
1145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205085 |
gttgtgaaatttcgaggaaattttctctctctataattgtgagtttctctctctagaagatgaagaaacgaagggtgattttgttatttgatggtgtttc |
20205184 |
T |
|
| Q |
1146 |
gaggtgagagaaagtgaaagagaaactctgcttgggagaaga |
1187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
20205185 |
gaggtgagagaaagtgaaagagaaactctgcttgagagaaga |
20205226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 44 - 294
Target Start/End: Original strand, 20204083 - 20204333
Alignment:
| Q |
44 |
cacagaaccaaagatcatacaaatgatttccataagtcaacagattatttccaccatttacaggataaaggtaaaatatatacaatcatagcctcctaca |
143 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20204083 |
cacaaaaccaaagatcatacaaatgatttccataagtcaacagattatttccaccatttacaggataaaggtaaaatatatacaatcatagcctcctaca |
20204182 |
T |
|
| Q |
144 |
tactagatgaaaagcaacaatactctatcaagcactggcacagacaccaacacgatgagacctttaataatttgagaaaatgaatcatttgaacgtattc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20204183 |
tactagatgaaaagcaacaatactctatcaagcactggcacagacaccaacacgatgagacctttaataatttgagaaaatgaatcatttgaacgtaatc |
20204282 |
T |
|
| Q |
244 |
acatgtgtcgacgtcgtgtcagtgctacagagataatcataaccaagttag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20204283 |
acatgtgtcgacgtcgtgtcagtgctacagagacaatcataaccaagttag |
20204333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 843192 - 843150
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtg |
250 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
843192 |
taataatttgagaaaatgaattatttgaacgtaatcacatgtg |
843150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 16010717 - 16010760
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgt |
251 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||||||| |
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|
| T |
16010717 |
taataatttgagaaaataaatcatttgaacgcaatcacatgtgt |
16010760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 18268056 - 18268011
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgtcg |
253 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
18268056 |
taataatttgagaaaatgaattaattgaacgtaatcacatgtgtcg |
18268011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 21768614 - 21768659
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgtcg |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
21768614 |
taataatttgagaaaatgaattatttgaacgtaaccacatgtgtcg |
21768659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 47542543 - 47542588
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgtcg |
253 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
47542543 |
taataatttgagaaaatgaactatttgaatgtaatcacatgtgtcg |
47542588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 6074035 - 6074078
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgt |
251 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
6074035 |
taataatttgagaaaatgaattatttgaacgtaatcatatgtgt |
6074078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 6074523 - 6074564
Alignment:
| Q |
210 |
ataatttgagaaaatgaatcatttgaacgtattcacatgtgt |
251 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
6074523 |
ataatttgagaaaatgaattagttgaacgtaatcacatgtgt |
6074564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 9895155 - 9895198
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgt |
251 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
9895155 |
taataatttgagaaaataaattatttgaacgtaatcacatgtgt |
9895198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 15086706 - 15086749
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgt |
251 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
15086706 |
taataatttgagaaagtgaattatttgaacgtaatcacatgtgt |
15086749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 21186682 - 21186637
Alignment:
| Q |
208 |
taataatttgagaaaatgaatcatttgaacgtattcacatgtgtcg |
253 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
21186682 |
taatgatttgagaaagtgaattatttgaacgtaatcacatgtgtcg |
21186637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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