View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_10 (Length: 398)
Name: NF13822_low_10
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 12926378 - 12926014
Alignment:
| Q |
8 |
gtcgaagaatatagttgagtcgatgaacactccatagtaaatttcctt--cttatatacttatccatttttnnnnnnnnnnn--tcacaaaagtagnnnn |
103 |
Q |
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| T |
12926378 |
gtcgaaaaacatagttgagtcgatgaacactccatagtaaatttccttttcttatatactcatccttttttttaaaaaaaaagattacaaaattagtttt |
12926279 |
T |
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| Q |
104 |
nnngacaagaagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttc |
203 |
Q |
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| T |
12926278 |
tttgacaagaagatcagaaaagtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttc |
12926179 |
T |
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| Q |
204 |
ttttagaggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccg |
303 |
Q |
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| T |
12926178 |
ttttagaggtgaattaaaaatcaattattaactcacaat----------attcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccg |
12926089 |
T |
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| Q |
304 |
ccaaatgaaagagcaacaaacaccaaccaaactctctgcacctcgctccgcagagaatcgcaccgcaagatccaa |
378 |
Q |
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| T |
12926088 |
ccaaatgaaagagcaacaaacaccaaccaaactctctgcacctcgctccgcagagaatcgcaccgcaagatccaa |
12926014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 113 - 338
Target Start/End: Original strand, 30789517 - 30789739
Alignment:
| Q |
113 |
aagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaattt--cttttaga |
210 |
Q |
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| T |
30789517 |
aagatcacaaaagtaattgttagaagataaattagtttccct---aaaaaaataccgataaatttcttttttagaggtttgaattaatttttcttttagg |
30789613 |
T |
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| Q |
211 |
ggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccgccaaatg |
310 |
Q |
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||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||| |||| || | |||||| | |
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| T |
30789614 |
ggtgaattaaaaaaaaattatc--ctcacaatattagagaacattccagctataaatacagtcaaaattgaaatcagcaaaacgtttaaactgccaaacg |
30789711 |
T |
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| Q |
311 |
aaagagcaacaaacaccaaccaaactct |
338 |
Q |
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| T |
30789712 |
aaagagcaacaaacaccaaccaaactct |
30789739 |
T |
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