View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_11 (Length: 371)
Name: NF13822_low_11
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 184 - 371
Target Start/End: Original strand, 7350950 - 7351137
Alignment:
| Q |
184 |
atgttttttaagcgttttatggtgtattaatgctacactctaatatgttagcaggatgtcatacatttaggaaaatgtctgataaggaggttggatatga |
283 |
Q |
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| T |
7350950 |
atgttttttaagtgttttatggtgtattaatgctacaatctaatatgttagcaggatgtaatacatttaggaaaatgtttgataaggaggttggatatga |
7351049 |
T |
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| Q |
284 |
tttagtatagtgttacatcaagatgatcgatcagacattaaattagtatgaggtcgtggttgatcaaaagcatggtaagatatgtttc |
371 |
Q |
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| T |
7351050 |
tttagtataccgttacatcaagatgatcaatcagacattaaattagtatgaggtcgtggttgaccaaaagcatggcaagatatgtttc |
7351137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7349581 - 7349737
Alignment:
| Q |
1 |
aaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgt |
100 |
Q |
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| T |
7349581 |
aaaaggaaggtatgcaactgcattcaaaatctaattaacattttcatacatttttgagtaatattcaaattgtcaacgatgaagaggaagctaccttt-- |
7349678 |
T |
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| Q |
101 |
taaagttaaattgacattaaaattgaataagtattgatgcaaaactagaaaagatgttaaatg |
163 |
Q |
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| T |
7349679 |
----gttaaattgacattaaaattgaataagtattgatgcaaaactagaaaagatgttaaatg |
7349737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24259036 - 24259190
Alignment:
| Q |
1 |
aaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgt |
100 |
Q |
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| T |
24259036 |
aaaaggaaggtatgcaactgcattcaaaatctcattcacattttcatacattttttagtaatattccaattgtcaacgatgaagaggtagctaccttt-- |
24259133 |
T |
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| Q |
101 |
taaagttaaattgacattaaaattgaataagtattgatgcaaaactagaaaagatgttaaa |
161 |
Q |
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| T |
24259134 |
----gttaaattgacattaaaaatgaataagtattgatgcaaaattagaaaagatgttaaa |
24259190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 54934002 - 54933848
Alignment:
| Q |
1 |
aaaaggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgt |
100 |
Q |
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| T |
54934002 |
aaaaggaaggtatgcaactgcaatcaaaatctcattcacattttcatacatttttgagtaatattccaattgtcaacgatgaagaggtagctacctttgt |
54933903 |
T |
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| Q |
101 |
taaagttaaattgacattaaaattgaataagtattgatgcaaaactagaaaagatgttaaa |
161 |
Q |
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| T |
54933902 |
------taaattgacattaaaaatgaataagtattgatgcaaaattagaaaagatgttaaa |
54933848 |
T |
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