View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13822_low_13 (Length: 300)

Name: NF13822_low_13
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13822_low_13
NF13822_low_13
[»] chr5 (3 HSPs)
chr5 (153-282)||(6796378-6796507)
chr5 (53-95)||(16594401-16594443)
chr5 (53-95)||(41173256-41173298)
[»] chr3 (6 HSPs)
chr3 (54-101)||(31425532-31425579)
chr3 (52-99)||(37143121-37143168)
chr3 (53-99)||(15927620-15927666)
chr3 (54-99)||(31931045-31931090)
chr3 (53-95)||(49875800-49875842)
chr3 (62-99)||(31664624-31664661)
[»] chr1 (4 HSPs)
chr1 (52-99)||(18982519-18982566)
chr1 (59-99)||(36775072-36775112)
chr1 (53-99)||(46859418-46859464)
chr1 (52-93)||(36775112-36775153)
[»] chr6 (3 HSPs)
chr6 (53-97)||(28982664-28982708)
chr6 (53-100)||(17181961-17182008)
chr6 (53-99)||(354276-354322)
[»] chr7 (2 HSPs)
chr7 (52-99)||(48814832-48814879)
chr7 (52-96)||(2819256-2819300)
[»] chr8 (1 HSPs)
chr8 (52-98)||(21514961-21515007)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 153 - 282
Target Start/End: Complemental strand, 6796507 - 6796378
Alignment:
Q  153 tggaaccaaccacggttcaatccagttcaaccagactgcaatacaatcaagatcaaaccagctgacaaactggccaattttgaaaacaatgatttacaca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796507 tggaaccaaccacggttcaatccagttcaaccagactgcaatacaatcaagatcaaaccagctgacaaactggccaattttgaaaacaatgatttacaca 6796408  T
Q  253 cataaaggtactcaatgcagatcataaagc 282  Q
     |||||||||||||||||||||||||||||    
T  6796407 tataaaggtactcaatgcagatcataaagc 6796378  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 16594401 - 16594443
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcatt 95  Q
    ||||| |||||||||||||||||||||||||| | ||||||||    
T  16594401 gttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 16594443  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 41173298 - 41173256
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcatt 95  Q
    ||||||||||||||||| | |||||||||||||| ||||||||    
T  41173298 gttgttacaaaagttgtcacaaaatggatgtttaaatatcatt 41173256  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 31425579 - 31425532
Alignment:
Q  54 ttgttacaaaagttgttaaaaaatggatgtttagatatcattactcca 101  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||    
T  31425579 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactcca 31425532  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 37143168 - 37143121
Alignment:
Q  52 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||    
T  37143168 ggttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 37143121  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 15927620 - 15927666
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||    
T  15927620 gttgttacaaaagttgttaaaaaatggatgttcaaatattattactc 15927666  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 31931045 - 31931090
Alignment:
Q  54 ttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||    
T  31931045 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 31931090  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 49875842 - 49875800
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcatt 95  Q
    ||||| |||||||||||||||||||||||||| | ||||||||    
T  49875842 gttgtcacaaaagttgttaaaaaatggatgttaaaatatcatt 49875800  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 31664661 - 31664624
Alignment:
Q  62 aaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  31664661 aaagttgttaaaaaatggatgttcaaatatcattactc 31664624  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 18982566 - 18982519
Alignment:
Q  52 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||    
T  18982566 ggttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 18982519  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 36775112 - 36775072
Alignment:
Q  59 acaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  36775112 acaaaagttgttaaaaaatggatgttcaaatatcattactc 36775072  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 46859464 - 46859418
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    ||||| |||||||||||||||||||||||| | | ||||||||||||    
T  46859464 gttgtcacaaaagttgttaaaaaatggatgctcaaatatcattactc 46859418  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 36775153 - 36775112
Alignment:
Q  52 ggttgttacaaaagttgttaaaaaatggatgtttagatatca 93  Q
    |||||| |||||||||||||||||||||||||| | ||||||    
T  36775153 ggttgtcacaaaagttgttaaaaaatggatgttcaaatatca 36775112  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 28982664 - 28982708
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcattac 97  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||    
T  28982664 gttgtcacaaaagttgttaaaaaatggatgttcaaatatcattac 28982708  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 17181961 - 17182008
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactcc 100  Q
    |||||||||||||||||| |||||||| |||||| |||||||| ||||    
T  17181961 gttgttacaaaagttgttcaaaaatggttgtttaaatatcatttctcc 17182008  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 354322 - 354276
Alignment:
Q  53 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    ||||| |||||||||||||||||||||||||| | | ||||||||||    
T  354322 gttgtcacaaaagttgttaaaaaatggatgttcaaacatcattactc 354276  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 48814832 - 48814879
Alignment:
Q  52 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 99  Q
    |||||| |||||||||||||||||||| ||||| | ||||||||||||    
T  48814832 ggttgtcacaaaagttgttaaaaaatgaatgttcaaatatcattactc 48814879  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 2819300 - 2819256
Alignment:
Q  52 ggttgttacaaaagttgttaaaaaatggatgtttagatatcatta 96  Q
    |||||| | |||||||||||||||||||||||| | |||||||||    
T  2819300 ggttgtcataaaagttgttaaaaaatggatgttcaaatatcatta 2819256  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 21514961 - 21515007
Alignment:
Q  52 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattact 98  Q
    |||||| |||||| ||||||||||||||||||| | |||||||||||    
T  21514961 ggttgtcacaaaaattgttaaaaaatggatgttcaaatatcattact 21515007  T

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