View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13822_low_14 (Length: 282)

Name: NF13822_low_14
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13822_low_14
NF13822_low_14
[»] chr5 (15 HSPs)
chr5 (115-272)||(6796584-6796741)
chr5 (4-101)||(16594271-16594365)
chr5 (13-101)||(13739527-13739615)
chr5 (14-101)||(25603560-25603645)
chr5 (1-90)||(27546409-27546497)
chr5 (24-101)||(21575637-21575714)
chr5 (1-101)||(16967370-16967470)
chr5 (29-101)||(26009134-26009205)
chr5 (1-101)||(5899779-5899879)
chr5 (1-101)||(10008409-10008505)
chr5 (1-69)||(34379532-34379601)
chr5 (4-47)||(25585403-25585446)
chr5 (6-101)||(29499669-29499764)
chr5 (14-79)||(1981974-1982039)
chr5 (24-101)||(13332417-13332496)
[»] chr3 (29 HSPs)
chr3 (3-101)||(31350498-31350596)
chr3 (2-99)||(46114255-46114352)
chr3 (18-103)||(37143199-37143282)
chr3 (1-101)||(49875873-49875972)
chr3 (1-103)||(31425611-31425711)
chr3 (1-103)||(15927485-15927587)
chr3 (1-103)||(50886271-50886371)
chr3 (18-103)||(31930925-31931010)
chr3 (16-103)||(31664701-31664788)
chr3 (4-101)||(33976286-33976383)
chr3 (16-101)||(41610409-41610494)
chr3 (1-99)||(23553485-23553583)
chr3 (1-101)||(50886471-50886573)
chr3 (5-101)||(43898646-43898742)
chr3 (26-101)||(1291619-1291694)
chr3 (18-99)||(36639197-36639278)
chr3 (1-101)||(4617757-4617855)
chr3 (1-101)||(35986991-35987090)
chr3 (1-99)||(23553672-23553769)
chr3 (16-101)||(34608193-34608278)
chr3 (12-101)||(37279161-37279250)
chr3 (4-99)||(40367690-40367785)
chr3 (1-99)||(108509-108606)
chr3 (1-69)||(11327186-11327256)
chr3 (1-55)||(45295678-45295732)
chr3 (1-49)||(12044699-12044747)
chr3 (2-50)||(16295543-16295591)
chr3 (16-99)||(33389102-33389184)
chr3 (1-101)||(47479059-47479159)
[»] chr6 (10 HSPs)
chr6 (1-103)||(28982531-28982633)
chr6 (2-101)||(34383750-34383849)
chr6 (12-103)||(10729660-10729752)
chr6 (5-83)||(2204313-2204391)
chr6 (1-103)||(5456740-5456842)
chr6 (1-101)||(354353-354450)
chr6 (1-79)||(23632551-23632629)
chr6 (1-55)||(32729967-32730021)
chr6 (4-69)||(3339422-3339489)
chr6 (1-49)||(27790180-27790228)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-101)||(1093-1193)
[»] chr7 (14 HSPs)
chr7 (1-101)||(2819332-2819432)
chr7 (1-101)||(12651214-12651314)
chr7 (12-101)||(18736092-18736180)
chr7 (12-101)||(19223536-19223625)
chr7 (1-101)||(11778657-11778757)
chr7 (1-101)||(17117050-17117150)
chr7 (14-101)||(44255789-44255876)
chr7 (1-79)||(9792845-9792925)
chr7 (53-103)||(48591154-48591204)
chr7 (5-59)||(48814740-48814794)
chr7 (12-99)||(31289257-31289344)
chr7 (1-69)||(33050261-33050331)
chr7 (18-79)||(41750200-41750261)
chr7 (2-82)||(47424896-47424977)
[»] chr1 (17 HSPs)
chr1 (1-101)||(5466227-5466327)
chr1 (1-103)||(36775184-36775286)
chr1 (14-103)||(46859522-46859611)
chr1 (2-101)||(38762208-38762307)
chr1 (1-101)||(41411035-41411135)
chr1 (14-101)||(35414468-35414555)
chr1 (14-101)||(38289656-38289743)
chr1 (14-101)||(49660059-49660146)
chr1 (1-99)||(27260603-27260701)
chr1 (3-101)||(29936823-29936921)
chr1 (16-103)||(18982597-18982684)
chr1 (23-101)||(4604712-4604790)
chr1 (14-102)||(5980945-5981036)
chr1 (2-94)||(42824531-42824623)
chr1 (1-101)||(48872697-48872797)
chr1 (1-82)||(15061923-15062006)
chr1 (12-56)||(15067765-15067809)
[»] chr8 (14 HSPs)
chr8 (1-101)||(12171982-12172083)
chr8 (1-101)||(12416410-12416511)
chr8 (1-101)||(12946520-12946620)
chr8 (18-94)||(40649560-40649636)
chr8 (1-101)||(7612101-7612201)
chr8 (1-101)||(10309773-10309873)
chr8 (1-62)||(31266165-31266226)
chr8 (4-101)||(37792055-37792151)
chr8 (41-101)||(44952746-44952806)
chr8 (16-101)||(44712520-44712605)
chr8 (26-101)||(36023186-36023261)
chr8 (1-55)||(29509344-29509398)
chr8 (1-76)||(32234369-32234445)
chr8 (1-49)||(18550057-18550105)
[»] chr4 (16 HSPs)
chr4 (1-101)||(3698392-3698492)
chr4 (48-101)||(54128172-54128225)
chr4 (1-101)||(54342861-54342961)
chr4 (2-101)||(23719413-23719512)
chr4 (1-101)||(12706243-12706343)
chr4 (1-56)||(7146069-7146124)
chr4 (37-101)||(4700013-4700077)
chr4 (2-69)||(54909403-54909471)
chr4 (58-101)||(4272460-4272503)
chr4 (1-79)||(51734547-51734625)
chr4 (1-82)||(22257107-22257189)
chr4 (1-65)||(8455981-8456047)
chr4 (1-66)||(37726982-37727047)
chr4 (27-72)||(37989187-37989232)
chr4 (1-82)||(4896411-4896493)
chr4 (1-101)||(54199174-54199274)
[»] chr2 (11 HSPs)
chr2 (5-101)||(41317280-41317376)
chr2 (1-101)||(4969426-4969527)
chr2 (4-101)||(36003456-36003553)
chr2 (2-101)||(15260387-15260484)
chr2 (1-99)||(40209962-40210060)
chr2 (12-99)||(7438658-7438745)
chr2 (1-101)||(36193618-36193718)
chr2 (2-82)||(6365265-6365346)
chr2 (16-100)||(37468158-37468239)
chr2 (4-49)||(11152644-11152689)
chr2 (18-101)||(30415109-30415192)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 6796584 - 6796741
Alignment:
Q  115 gttcaaccacttttgaactaattaaaccatgacctccagaggtctcaatagtttgatctttcgtccgatttttaaaacattgatatgaagtaaacttgtg 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796584 gttcaaccacttttgaactaattaaaccatgacctctagaggtctcaatagtttgatctttcgtccgatttttaaaacattgatatgaagtaaacttgtg 6796683  T
Q  215 ttttcttttgtatgtttttctatttgttcgcattacttgttggtttgtgggatattct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6796684 ttttcttttgtatgtttttctatttgttcgcattacttgttggtttgtgggattttct 6796741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 16594365 - 16594271
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||||||||| | ||||||||||||| |||   |||||| |||||||||||||||||    
T  16594365 tctcttcctttttctctctctattgttattgtccaataaaaagagaggaaataagttgtcactaaaaattg---gaaattggttgtcaaaatatcatt 16594271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 13739527 - 13739615
Alignment:
Q  13 ttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||| |||| ||||||| ||||||||||  || |||||||||||| ||||||||||||| || || |||||||||||||||||    
T  13739527 ttctctctctctattattattgtccaataaaaaggaagaaaaaaggttgtccctaaaagttgtttaaagttggttgtcaaaatatcatt 13739615  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 25603645 - 25603560
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||| |||||||||||| ||||||||||||  |||||| ||| ||||||||| ||||| |||||| |||||||||||||||||    
T  25603645 tctctctctctattgttattgtccaataaaaagag--gaaaaatgttatcactaaaaattgttagaaattggttgtcaaaatatcatt 25603560  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27546409 - 27546497
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtc 90  Q
    ||||||||  || ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||| |||||| ||||| ||||||    
T  27546409 ctctctctctctctctctctctctattgttattgttcaatgaaaagagaggaaaaaagttgtcacgaaaa-ttgtttaaaattggttgtc 27546497  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 21575714 - 21575637
Alignment:
Q  24 tattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||||| || ||| ||  ||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||    
T  21575714 tattgttattgtccattaagaacggaggaaaaatgttgtcactaaatgttgtttaaaattggttgtcaaaatatcatt 21575637  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16967470 - 16967370
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    ||||||||| ||||   ||||| |||||||||  | |||||| || |||||||||| |||||| ||||||||||||  ||||||| ||||||||||||||    
T  16967470 ctctctctttcttttattctctctattgttatcatccaataagaatagaggaaaaatgttgtccctaaaagttgttgaaaattagatgtcaaaatatcat 16967371  T
Q  101 t 101  Q
    |    
T  16967370 t 16967370  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 26009205 - 26009134
Alignment:
Q  29 ttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||| |||||| || ||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||    
T  26009205 ttattgtccaataagaaaagaggaaaa-ggttgtcactaaaagttgtttaaaattgattgtcaaaatatcatt 26009134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5899879 - 5899779
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagagga-aaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||||| |||| | | ||| |||||||||| | |||||| ||||||||| ||||||| |||||||||| ||||||||  || |||||||||||||||    
T  5899879 ctctctctttctttttatttctctattgttattatccaataagaagagaggaaaaaaggtagtcactaaaa-ttgtttgattttggttgtcaaaatatca 5899781  T
Q  100 tt 101  Q
    ||    
T  5899780 tt 5899779  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10008505 - 10008409
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||| ||||| |||||||||  ||||||||| ||||||  |||||  ||||||||||||||| ||||||||||  |||| |||||| |||||||||    
T  10008505 ctctctctccctttttctctctat--tgttattgtccaataaggagagaa-aaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcat 10008410  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34379532 - 34379601
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaa-aaaggttgtcactaaa 69  Q
    |||| |||| |||| ||||||| |||||||||||| |||| |||||||||||| |||||||||| |||||    
T  34379532 ctctttctttctttttctctctctattgttattgtccaatgaaaagagaggaataaaggttgtctctaaa 34379601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 25585446 - 25585403
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaaga 47  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||    
T  25585446 tctcttcctttttctctctatattgtttttgatcaataaaaaga 25585403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 29499764 - 29499669
Alignment:
Q  6 tcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||| ||||||| |||||||||  | |||||| ||  |||||||||| || || |||||| |||||  ||||| | |||||||||||||||    
T  29499764 tcttcctttttctctctctattgttatcatccaataagaattgaggaaaaagattatccctaaaaattgttaaaaattggatgtcaaaatatcatt 29499669  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 1981974 - 1982039
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagag-aggaaaaaggttgtcactaaaagttgtttga 79  Q
    ||||||||| |||||||||||| |||||| ||||| || ||||||||||||| | ||||||||||||    
T  1981974 tctctctctctattgttattgtccaataagaagagaagaaaaaaggttgtca-ttaaagttgtttga 1982039  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 13332417 - 13332496
Alignment:
Q  24 tattgttattgttcaataaaaagagag--gaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||||| |||||| |||||||  ||||||  || |||  ||||||||||| ||||| ||| |||||||||||||    
T  13332417 tattgttattgtccaataagaagagagaagaaaaaaattatcataaaaagttgtttaaaattggttatcaaaatatcatt 13332496  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 31350596 - 31350498
Alignment:
Q  3 ctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  31350596 ctctcttcctttttctctctatattgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 31350498  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 46114352 - 46114255
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||||||||    
T  46114352 tctctcttcttttttctctctctattgttattgttcaatagaaagagaggaaaaaggttgtcaccaaaagttgttggaaattgattgtcaaaatatca 46114255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 37143199 - 37143282
Alignment:
Q  18 tctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37143199 tctctctattgttattgtccaataaaaagag--gaaaaaggttgtcactaaaagttgttggaaattagttgtcaaaatatcattac 37143282  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49875873 - 49875972
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||| ||| ||||||| |||||||||||| |||| |||||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||    
T  49875873 ctctctcttcatttttctctctctattgttattgtccaatgaaaagagaggaaaaa-attgtcactaaaagttgttggaaattggttgtcaaaatatcat 49875971  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31425611 - 31425711
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    ||||||||| |||| |||||||||  ||||||||| |||||||||||||||||||||||||||| ||||| || ||  ||||||||||||||||||||||    
T  31425611 ctctctctttctttttctctctat--tgttattgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaaattagttgtcaaaatatcat 31425708  T
Q  101 tac 103  Q
    |||    
T  31425709 tac 31425711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15927587 - 15927485
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||||||  |||||||||||| |||||||||||| | ||||| ||||||||||||| || || |||||| ||||||||||||||||    
T  15927587 ctctctcttcctttttctctcactattgttattgtccaataaaaagagcgaaaaaaagttgtcactaaaaattattggaaattggttgtcaaaatatcat 15927488  T
Q  101 tac 103  Q
    |||    
T  15927487 tac 15927485  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50886271 - 50886371
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||  |||||||||| ||||||||| |||||||||  |||||  |||||||||||||||    
T  50886271 ctctctcttcctttttctctctctattgttattgtccaataaaa--agaggaaaaacgttgtcactgaaagttgttgaaaattgattgtcaaaatatcat 50886368  T
Q  101 tac 103  Q
    |||    
T  50886369 tac 50886371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 31931010 - 31930925
Alignment:
Q  18 tctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    ||||| |||||||||| | |||| ||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||    
T  31931010 tctctctattgttattctccaatgaaaagagaggaaaaaggttatcactaaaatttgttggaaattggttgtcaaaatatcattac 31930925  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 31664701 - 31664788
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    ||||||| | || ||||| | |||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  31664701 tctctctctttttttattctccaatgaaaagagaggaaaaaggttatcactaaaagttgttggaaattggttgtcaaaatatcattac 31664788  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 33976383 - 33976286
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||| ||| ||||||| |||||||||| | |||||||||||||||||||  ||||||||||||| |||||  ||||||  |||||||||||||||    
T  33976383 tctcttcatttttctctctctattgttattatccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaattaaatgtcaaaatatcatt 33976286  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 41610409 - 41610494
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||| ||||||||||||  ||||||||||||| ||||| |||||||||| ||||||||| ||||| || ||||||||||||||    
T  41610409 tctctctctattgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtttaaaatttgtagtcaaaatatcatt 41610494  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 23553583 - 23553485
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag-gaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||||| |||| ||||||| |||||||||||| |||| |||||||||  ||||||||||||||| ||||||||||||  || |||||| ||||||||    
T  23553583 ctctctctttctttttctctctctattgttattgtccaatgaaaagagagaaaaaaaggttgtcact-aaagttgtttgattttggttgtccaaatatca 23553485  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50886471 - 50886573
Alignment:
Q  1 ctctctcttcctttctct--ctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatc 98  Q
    |||||||||||||| |||  |||| ||||| |||||| |||||| ||  ||||||||||||||||||  |||||||| | ||||| ||||||||||||||    
T  50886471 ctctctcttcctttttctttctctctattgctattgtccaataagaatggaggaaaaaggttgtcacccaaagttgtctaaaattggttgtcaaaatatc 50886570  T
Q  99 att 101  Q
    |||    
T  50886571 att 50886573  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 43898646 - 43898742
Alignment:
Q  5 ctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||| |||| | ||||| |||||||||||| |||||| |||| || ||||| ||||||| | |||||||||| ||| | |||||||||||||||||    
T  43898646 ctctttctttttttctctctattgttattgtccaataagaagatagaaaaaaagttgtcaatgaaagttgtttaaaaattgttgtcaaaatatcatt 43898742  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 1291619 - 1291694
Alignment:
Q  26 ttgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||| |||| |||||||| ||||||| || ||||||||| |||||  || ||||||||||||||||||||    
T  1291619 ttgttattgtccaattaaaagagaagaaaaagattatcactaaaaattgttaaaatttagttgtcaaaatatcatt 1291694  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 36639197 - 36639278
Alignment:
Q  18 tctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||| |||||||||||| ||||| ||||||||| ||||| |||||| || |||||||||||||||| |||||| ||||||||    
T  36639197 tctctctattgttattgtccaatagaaagagaggaaaaaatgttgtccct-aaagttgtttgaaattggttgtccaaatatca 36639278  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4617757 - 4617855
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| | |||||||  ||||||||| ||||||||| ||||||||||   |||||   ||| |||||||||||| | ||||||||||||||    
T  4617757 ctctctcttcctttttttctctat--tgttattgtccaataaaaatagaggaaaaaaactgtcatccaaaattgtttgaaattggatgtcaaaatatcat 4617854  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35986991 - 35987090
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||| ||||||| ||||||| |||| |||||||  |||||||| | || |||||| || ||| |||||||||||  ||||| ||||||||||||||||    
T  35986991 ctctcttttcctttttctctct-tattattattgtctaataaaaaaaaagaaaaaagtttatcattaaaagttgttgaaaattggttgtcaaaatatcat 35987089  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 23553769 - 23553672
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaa-ggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||||| |||| ||||||| |||| ||||||| |||| ||||||||| ||||| |||||||||| ||||||||||||  || |||||| ||||||||    
T  23553769 ctctctctttctttttctctctctatt-ttattgtccaatgaaaagagagaaaaaaaggttgtcact-aaagttgtttgattttggttgtccaaatatca 23553672  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 34608193 - 34608278
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||| |||| ||||| | |||||| |||  || |||||| || || ||||||||||||| |||||| ||||||||||||||||    
T  34608193 tctctctctattattattatccaataagaaggaagaaaaaagattatccctaaaagttgtttaaaattaattgtcaaaatatcatt 34608278  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 37279250 - 37279161
Alignment:
Q  12 tttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||| |||||||||| | |||||||||   |||||||| ||| |||   ||| || ||||||||||| |||||||||||||||    
T  37279250 tttctctctctctattgttattatccaataaaaatgaaggaaaaaagttatcatccaaaattatttgaaattagatgtcaaaatatcatt 37279161  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 40367690 - 40367785
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||| |||| ||||||| |||||||||| | |||||| |||||||| ||||||||||||| | | ||||||||||  || |||||| ||||||||    
T  40367690 tctctttctttttctctctctattgttattatccaataagaagagaggaaaaaaggttgtcaat-agagttgtttgattttggttgtccaaatatca 40367785  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 108509 - 108606
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaat-aaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||||||||||||||||||  |||||| || | |||| |||||||||  ||||| |||||||| ||||||||| ||||| |||||||  ||||||||    
T  108509 ctctctcttcctttctctctctccattgtttttatccaatgaaaaagaga-aaaaaaagttgtcaccaaaagttgtatgaaa-tagttgttcaaatatca 108606  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11327186 - 11327256
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag-gaaa-aaggttgtcactaaa 69  Q
    |||||||||||||| ||||||| ||||||| |||  |||||| ||||||| |||| |||||||||||||||    
T  11327186 ctctctcttcctttttctctctctattgtttttgaccaataagaagagagagaaacaaggttgtcactaaa 11327256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45295732 - 45295678
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaa 55  Q
    |||||||||||||| |||||||| |||||| |||  |||| ||||||||||||||    
T  45295732 ctctctcttcctttttctctctacattgtttttgaccaatcaaaagagaggaaaa 45295678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12044747 - 12044699
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagaga 49  Q
    ||||||||||||||||||||||  |||||| ||| ||||||| ||||||    
T  12044747 ctctctcttcctttctctctcttcattgtttttgatcaataagaagaga 12044699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 16295543 - 16295591
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagag 50  Q
    ||||||||||||| ||||||| ||||||| |||  ||||||||||||||    
T  16295543 tctctcttcctttttctctctctattgtttttgaccaataaaaagagag 16295591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33389102 - 33389184
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagaggaaaaa-ggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||||||||| ||||| | |||||| ||||||||||||| |||||||| || | |||||||||  || |||||||||||||||    
T  33389102 tctctctatatt-ttattatccaataagaagagaggaaaaaaggttgtcaataga-gttgtttgattttggttgtcaaaatatca 33389184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 47479059 - 47479159
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||| ||| |||| |||||||  || || |||  || |||||  ||||| |||||| |||||| |||||  |||||||||||||||    
T  47479059 ctctctcttcctttttctttctctattattattgtcaaagaagaaggaagaaaaaaaattgtccctaaaaattgtttaaaattgattgtcaaaatatcat 47479158  T
Q  101 t 101  Q
    |    
T  47479159 t 47479159  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28982633 - 28982531
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  28982633 ctctctcttcctttttctctccctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggttgtcaaaatatcat 28982534  T
Q  101 tac 103  Q
    |||    
T  28982533 tac 28982531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 34383849 - 34383750
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||    
T  34383849 tctcttttcctttttctctctctattgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattggatgtcaaaatatcatt 34383750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 10729660 - 10729752
Alignment:
Q  12 tttctctctctata-ttgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    |||||||||||||  |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  10729660 tttctctctctattgttgttattgtccagtaaaaagagaggaaaaaggttgtcactaaaagttgttggaaattggttgtcaaaatatcattac 10729752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 2204391 - 2204313
Alignment:
Q  5 ctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaatt 83  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  2204391 ctcttcctttctctctctctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaatt 2204313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5456842 - 5456740
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||| ||| ||||||| |||||||||||| |||||||||||| | ||||| ||| ||||||||||||||| |||||| ||||||||||||||||    
T  5456842 ctctctcttcttttttctctctctattgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggttgtcaaaatatcat 5456743  T
Q  101 tac 103  Q
    |||    
T  5456742 tac 5456740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 354353 - 354450
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||| |||||||||||  || ||  ||||||||||| |||||| ||||||||||||||||    
T  354353 ctctctctttctttctctctctat--tgttattgtccaataaaa-gagaggaaaaaaattatccttaaaagttgttggaaattggttgtcaaaatatcat 354449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23632629 - 23632551
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaa-aaaggttgtcactaaaagttgtttga 79  Q
    ||||||||| |||| ||||||| |||||||||||| |||||| ||||||  || ||||||||||||| ||||||||||||    
T  23632629 ctctctcttactttttctctctctattgttattgtccaataagaagagaaaaacaaaggttgtcact-aaagttgtttga 23632551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32729967 - 32730021
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaa 55  Q
    |||||||||||||| ||||||| ||||||| ||| ||||| ||||||||| ||||    
T  32729967 ctctctcttcctttttctctctctattgtttttgatcaatgaaaagagagaaaaa 32730021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 3339489 - 3339422
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagagaggaaa--aaggttgtcactaaa 69  Q
    ||||||||||| ||||||| ||||||| |||  |||||||||||||| |||  ||| |||||||||||    
T  3339489 tctcttcctttttctctctctattgtttttgaccaataaaaagagagaaaaacaagattgtcactaaa 3339422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27790228 - 27790180
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagaga 49  Q
    |||||||||| ||| ||||||||||||||| |||  |||||||||||||    
T  27790228 ctctctcttcttttttctctctatattgtttttgaccaataaaaagaga 27790180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 1193 - 1093
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||||||| |||||||||||| |||||| ||| ||||||||||||||||||  |||||||||| ||||| ||||||||||||||||    
T  1193 ctctctcttcctttttctctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcat 1094  T
Q  101 t 101  Q
    |    
T  1093 t 1093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2819332 - 2819432
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||| ||||| ||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||    
T  2819332 ctctatcttcgtttttctgtctctattgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaatatcat 2819431  T
Q  101 t 101  Q
    |    
T  2819432 t 2819432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 12651314 - 12651214
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||  ||| ||||||| |||||||||||| ||||| ||| |||||||||| |||||||| |||||||||| |||||| ||||||||||||||||    
T  12651314 ctctctctttatttttctctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggttgtcaaaatatcat 12651215  T
Q  101 t 101  Q
    |    
T  12651214 t 12651214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 18736092 - 18736180
Alignment:
Q  12 tttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||| | |||||||||| ||||||||| |||||||||  ||||||||||||| |||||| |||||| || |||||||||||||    
T  18736092 tttctctctcttttttgttattgtccaataaaaa-agaggaaaagagttgtcactaaaaattgtttaaaattatttatcaaaatatcatt 18736180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 19223536 - 19223625
Alignment:
Q  12 tttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||  |||||| ||||| || ||  |||||  ||||||||||||||||    
T  19223536 tttctctctctctattgttattgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattgattgtcaaaatatcatt 19223625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11778657 - 11778757
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||| ||| ||||||| |||| ||||||| |||||| |||  || |||||  ||||| ||||||||||||| ||||| ||||||||||||||||    
T  11778657 ctctctcttcatttttctctctctattattattgtccaataagaaggaagaaaaaaaattgtccctaaaagttgtttaaaattggttgtcaaaatatcat 11778756  T
Q  101 t 101  Q
    |    
T  11778757 t 11778757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17117150 - 17117050
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| || |||| ||||| |||||| || ||| ||  ||||||||||||||||||  ||| |||| | ||||| ||||||||||||||||    
T  17117150 ctctctcttcctttttcactctctattgctattgtccagtaagaatggaggaaaaaggttgtcacccaaaattgtctaaaattggttgtcaaaatatcat 17117051  T
Q  101 t 101  Q
    |    
T  17117050 t 17117050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 44255876 - 44255789
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||| |||| ||| ||| ||||||||||  || |||||||||||| ||||||||| ||| |||||  ||||||||||||||||    
T  44255876 tctctctctctattattactgtccaataaaaaggaagaaaaaaggttgtccctaaaagttatttaaaattgattgtcaaaatatcatt 44255789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9792845 - 9792925
Alignment:
Q  1 ctctctcttcctttctctctctat--attgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttga 79  Q
    ||||||||| |||| |||||||||  ||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||    
T  9792845 ctctctctttctttttctctctatttattgttattgtccaataagaagagaggaaaaaaggttgtcact-aaagttgtttga 9792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 48591204 - 48591154
Alignment:
Q  53 aaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    |||||||||||||  ||||||||| |||||| |||||||||||||||||||    
T  48591204 aaaaggttgtcacccaaagttgttggaaattggttgtcaaaatatcattac 48591154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 48814794 - 48814740
Alignment:
Q  5 ctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggt 59  Q
    |||||||||| ||||||| |||||||||||| ||||||||| |||| ||||||||    
T  48814794 ctcttcctttttctctctctattgttattgtccaataaaaaaagagaaaaaaggt 48814740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 31289344 - 31289257
Alignment:
Q  12 tttctctctctatattgttattgttcaataaaaagag-aggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||||||| |||||||||||| |||||| ||||| || ||||| ||||||| | ||||||||||||  || |||||| ||||||||    
T  31289344 tttctctctctctattgttattgtccaataagaagagaagaaaaaaagttgtca-ttaaagttgtttgattttggttgtccaaatatca 31289257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33050261 - 33050331
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag-gaaa-aaggttgtcactaaa 69  Q
    |||||||||||||| ||||||| ||||||| |||  |||||| ||||||| |||| |||||||||||||||    
T  33050261 ctctctcttcctttttctctctctattgtttttgaccaataagaagagagagaaacaaggttgtcactaaa 33050331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 41750200 - 41750261
Alignment:
Q  18 tctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttga 79  Q
    ||||| || ||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||    
T  41750200 tctctctactgttattgtccaataagaagagaggaaaaaaggttgtcactaaaa-ttgtttga 41750261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 47424977 - 47424896
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagagga-aaaaggttgtcactaaaagttgtttgaaat 82  Q
    ||||||||||||| |||||||  |||||| ||   |||||||||||||||| ||||  ||||||| ||||||||| ||||||    
T  47424977 tctctcttcctttttctctctccattgtttttaaccaataaaaagagaggaaaaaaaattgtcaccaaaagttgtatgaaat 47424896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5466327 - 5466227
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||| ||| |||||||||||| |||||| ||| ||||||||||||||||||  |||||||||| ||||| ||||||||||||||||    
T  5466327 ctctctcttcctttttctttctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcat 5466228  T
Q  101 t 101  Q
    |    
T  5466227 t 5466227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 36775184 - 36775286
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||||||| ||||| | |||||||||||| ||||||||| |||| ||||||||||||||  ||||||||| |||||| ||||||||||||| ||    
T  36775184 ctctctcttcctttttctctttctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggttgtcaaaatattat 36775283  T
Q  101 tac 103  Q
    |||    
T  36775284 tac 36775286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 46859522 - 46859611
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||  ||||||||||||||||| |||||| |||||| ||||||||||||    
T  46859522 tctctctctctattgttattgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggttgtctaaatatcattac 46859611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 38762307 - 38762208
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||| ||| ||||||| |||| |||||||||||||| |||  || |||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  38762307 tctctcttcatttttctctctctattattattgttcaataagaaggaagaaaaaaggttgtccctaaaagttgtttaaaattggttgtcaaaatatcatt 38762208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41411035 - 41411135
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||| |||| || ||||||||| |||||||||||| |||||| ||  ||||||||| |||||||   |||  ||||||||||||| ||||||||||||||    
T  41411035 ctctttctttctctctctctctctattgttattgtccaataagaatggaggaaaaaagttgtcatccaaaactgtttgaaattagatgtcaaaatatcat 41411134  T
Q  101 t 101  Q
    |    
T  41411135 t 41411135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 35414555 - 35414468
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||| |||||||||||| |||||| || |||||||||| |||||||   |||||| ||| ||||| | |||||||||||||||    
T  35414555 tctctctctctattgttattgtccaataagaatagaggaaaaaagttgtcatccaaagttatttaaaattggatgtcaaaatatcatt 35414468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 38289656 - 38289743
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||| ||| |||||||||||| |||||| || |||| ||||| |||||| ||||||||||||  ||||| | |||||||||||||||    
T  38289656 tctctatctctattgttattgtccaataagaatagagaaaaaaagttgtctctaaaagttgttgaaaatttgatgtcaaaatatcatt 38289743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 49660059 - 49660146
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||| |||||| |||||  ||||| || |||||||||| ||||||||  ||||||||||| |||| | |||||||||||||||    
T  49660059 tctctctctctattgtaattgtctaataagaatagaggaaaaaagttgtcacccaaagttgtttggaattggatgtcaaaatatcatt 49660146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27260701 - 27260603
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||||||||||| ||||||| |||||||||  | |||||| || ||||||||||  ||||| |||||| |||||  ||||| | |||||||||||||    
T  27260701 ctctctcttcctttttctctctctattgttatcatccaataagaacagaggaaaaatattgtctctaaaaattgttgaaaattggatgtcaaaatatca 27260603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 29936823 - 29936921
Alignment:
Q  3 ctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||| ||| ||||||  |||||||||| |||||||| ||  ||||||||| ||||| ||  |||||||||| ||||| ||||| |||||||||||    
T  29936823 ctctcttcttttttctctcactattgttattattcaataagaatggaggaaaaaagttgttacccaaagttgtttaaaattggttgttaaaatatcatt 29936921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 18982597 - 18982684
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcattac 103  Q
    ||||||| ||||||| || | ||||||||| |||  ||||| ||||||||  ||||||||| |||||| ||| |||||||||||||||    
T  18982597 tctctctctattgttgttatccaataaaaaaagataaaaaatgttgtcacccaaagttgttggaaattggttatcaaaatatcattac 18982684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 4604712 - 4604790
Alignment:
Q  23 atattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||| ||||||| |||||| ||   || ||||| |||||| ||||||||||||| ||||| |||||||||||||||||    
T  4604712 atattattattgtccaataagaatgaagaaaaaaagttgtccctaaaagttgttttaaattggttgtcaaaatatcatt 4604790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 5980945 - 5981036
Alignment:
Q  14 tctctctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcacta--aaagttgtttgaaattagttgtcaaaatatcatta 102  Q
    ||||||||| |||| ||||||| |||||| |||||||| |||||||||||||  |  || ||||||| |||||||||||  |||||||||||    
T  5980945 tctctctctctattattattgtgcaataagaagagaggaaaaaaggttgtcatcactaatgttgtttaaaattagttgttcaaatatcatta 5981036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 42824531 - 42824623
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaa 94  Q
    ||||||||||| | ||||||| ||||| |||| | |||||| || |||| ||||| ||||||||  |||||||||| |||||  |||||||||    
T  42824531 tctctcttcctatttctctctctattgatattatccaataagaaaagagaaaaaaagttgtcacataaagttgtttaaaattgtttgtcaaaa 42824623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 48872697 - 48872797
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    ||||||||  || ||||||||| |||||| ||||| |||||| || ||||||||||||||||| | | ||||| ||  ||||| | |||||| |||||||    
T  48872697 ctctctctctctctctctctctctattgtcattgtccaataagaatagaggaaaaaggttgtcccaacaagttattgaaaattggatgtcaatatatcat 48872796  T
Q  101 t 101  Q
    |    
T  48872797 t 48872797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15061923 - 15062006
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag--gaaaaaggttgtcactaaaagttgtttgaaat 82  Q
    |||||||||||||| |||||||  |||||| || | ||||||||||||||   ||||| |||||||| ||||||| | ||||||    
T  15061923 ctctctcttcctttttctctctccattgtttttatccaataaaaagagagaaaaaaaaagttgtcaccaaaagttatatgaaat 15062006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15067809 - 15067765
Alignment:
Q  12 tttctctctctatattgttattgttcaataaaaagagaggaaaaa 56  Q
    ||||||||||| ||||||| |||| |||||| |||||||||||||    
T  15067809 tttctctctctctattgttgttgtccaataagaagagaggaaaaa 15067765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 12172083 - 12171982
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaa-taaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||||||| ||| ||||||| |||||||||||| ||| ||| ||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  12172083 ctctctcttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatca 12171984  T
Q  100 tt 101  Q
    ||    
T  12171983 tt 12171982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 12416511 - 12416410
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaa-taaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||||||| ||| ||||||| |||||||||||| ||| ||| ||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  12416511 ctctctcttcatttttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatca 12416412  T
Q  100 tt 101  Q
    ||    
T  12416411 tt 12416410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 12946620 - 12946520
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    ||||||||  || ||||||||| |||||| ||||||||||||||| |||| ||||| |||||| | ||||||||||  ||||| | ||||||||||||||    
T  12946620 ctctctctctctctctctctctctattgtcattgttcaataaaaatagagaaaaaaagttgtcccaaaaagttgttgaaaattggatgtcaaaatatcat 12946521  T
Q  101 t 101  Q
    |    
T  12946520 t 12946520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 40649560 - 40649636
Alignment:
Q  18 tctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaa 94  Q
    ||||| ||||| |||||| ||||||||| |||||||||||||||||||||||| |||||  ||||| ||||||||||    
T  40649560 tctctctattgctattgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaa 40649636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7612201 - 7612101
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||  ||| ||||||| |||| |||||||  ||||| |||  || |||||| ||||| ||||||||||||| ||||| ||||||||||||||||    
T  7612201 ctctctctttatttttctctctctattattattgtctaataagaaggaagaaaaaagattgtccctaaaagttgtttaaaattggttgtcaaaatatcat 7612102  T
Q  101 t 101  Q
    |    
T  7612101 t 7612101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10309873 - 10309773
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||| ||||||| || |||| |||||||||||| |||||||||   |||||||||||| ||||  ||| |||||| |||||  |||||||||||||||    
T  10309873 ctctcttttcctttttccctctttattgttattgtccaataaaaaagaaggaaaaaggttatcacccaaaattgtttaaaattgattgtcaaaatatcat 10309774  T
Q  101 t 101  Q
    |    
T  10309773 t 10309773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31266226 - 31266165
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgt 62  Q
    |||||| || |||| ||||||| |||||||||||| |||||||||||||||||||| |||||    
T  31266226 ctctctttttctttttctctctctattgttattgtccaataaaaagagaggaaaaaagttgt 31266165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 37792151 - 37792055
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||| ||||||| |||| |||||||  ||||| ||| || |||||| |||||| |||||| || ||| ||||||||||| |||||||||||    
T  37792151 tctcttcctttttctctctctattattattgtctaataagaag-gaagaaaaaagttgtccctaaaaattatttaaaattagttgtgaaaatatcatt 37792055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 44952746 - 44952806
Alignment:
Q  41 aaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||| |||||| |||||||||||| ||||| ||||||  ||||||||||||||||    
T  44952746 aaaaagagagaaaaaagattgtcactaaaaattgttagaaattgattgtcaaaatatcatt 44952806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 44712520 - 44712605
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||| ||||| ||||| ||||||| || ||||||||||||||||||   |||||||| | ||||| ||| | |||||||||||    
T  44712520 tctctctctattgctattgctcaataagaatagaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcatt 44712605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 36023186 - 36023261
Alignment:
Q  26 ttgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||| |||| ||||| |||||||||| |||||||  ||| || ||| |||||  ||||||||||||||||    
T  36023186 ttgttattgtccaattaaaagggaggaaaaagattgtcacccaaaattatttaaaattgattgtcaaaatatcatt 36023261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29509344 - 29509398
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaa 55  Q
    |||||||||||||| |||||||  |||||| |||  |||||||||||||||||||    
T  29509344 ctctctcttcctttttctctcttcattgtttttgaccaataaaaagagaggaaaa 29509398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32234445 - 32234369
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag--gaaaaaggttgtcactaaaagttgtt 76  Q
    |||||||||| ||| |||||||||||||||||||  |||| | |||||||   |||||||||||| ||||||||||||    
T  32234445 ctctctcttcttttttctctctatattgttattgaccaatgagaagagagaataaaaaggttgtc-ctaaaagttgtt 32234369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18550057 - 18550105
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagaga 49  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||| ||||||    
T  18550057 ctctctcttcctttttctctctctattgtttttgatcaataagaagaga 18550105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3698392 - 3698492
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||| ||| ||||  | |||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||| |  |||||||||    
T  3698392 ctctctcttcttttttctccttttattgttattgtccaataaaaagagaggaaaaaagttgtcactaaaaattgttggaaattagttatgcaaatatcat 3698491  T
Q  101 t 101  Q
    |    
T  3698492 t 3698492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 54128172 - 54128225
Alignment:
Q  48 gaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  54128172 gaggaaaaaggttgtcactaaaagttgtttaaaattggttgtcaaaatatcatt 54128225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 54342861 - 54342961
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||| ||| ||||| | |||||||||||| |||||| ||  |||||| |||||||||||  |||||||||| ||||| |||||||| |||||||    
T  54342861 ctctctcttcttttttctctttgtattgttattgtccaataagaaaggaggaacaaggttgtcacccaaagttgtttaaaattggttgtcaagatatcat 54342960  T
Q  101 t 101  Q
    |    
T  54342961 t 54342961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 23719512 - 23719413
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||| | | ||||| ||||||||||||  ||||| ||  | ||||||||||||||| | |||||||||| ||||| |||||||||||||||||    
T  23719512 tctctcttcctctttttctctctattgttattgtcgaataagaaaggcggaaaaaggttgtcattcaaagttgtttcaaattggttgtcaaaatatcatt 23719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12706243 - 12706343
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||||||||| | ||||||| ||||||||||||||||| | |||||||| ||||||||||||| |||||  ||||| ||||| |||||  ||||||||    
T  12706243 ctctctcttcctctttctctctctattgttattgttcaattataagagaggaaaaaaggttgtca-taaaaaatgtttaaaattggttgtacaaatatca 12706341  T
Q  100 tt 101  Q
    ||    
T  12706342 tt 12706343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7146124 - 7146069
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaa 56  Q
    ||||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||    
T  7146124 ctctctctttctttttctctctctattgttattgtccaataaaaagagaggaaaaa 7146069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 4700077 - 4700013
Alignment:
Q  37 caataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||  ||||||||||  || |||||||||||||||| |||||| ||||||||||||||||    
T  4700077 caataaaataagaggaaaaaaattatcactaaaagttgtttaaaattaattgtcaaaatatcatt 4700013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 54909403 - 54909471
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaa-aaaggttgtcactaaa 69  Q
    |||||||| |||| ||||||| |||||||||||| |||| |||||||||||| |||||||||| |||||    
T  54909403 tctctctttctttttctctctctattgttattgtccaatgaaaagagaggaataaaggttgtccctaaa 54909471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 4272503 - 4272460
Alignment:
Q  58 gttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  4272503 gttgtcactaaaagttgttggaaattggttgtcaaaatatcatt 4272460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 51734625 - 51734547
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag-gaaaaaggttgtcactaaaagttgtttga 79  Q
    ||||||||| |||| ||||||| |||||||||||| |||||| |||||||  |||||| |||||||| ||||||||||||    
T  51734625 ctctctctttctttttctctctctattgttattgtccaataagaagagagaaaaaaagattgtcact-aaagttgtttga 51734547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22257189 - 22257107
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagag-gaaaaaggttgtcactaaaagttgtttgaaat 82  Q
    |||||||||||||| ||||||| ||||||| ||   |||| ||||||||| |||||| |||||||| ||||||||| ||||||    
T  22257189 ctctctcttcctttttctctctctattgtttttaaccaatgaaaagagagagaaaaaagttgtcaccaaaagttgtatgaaat 22257107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8455981 - 8456047
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaa--aaggttgtcac 65  Q
    |||||||||||||| ||||||| ||||||| |||  |||||||||||||| |||  |||||||||||    
T  8455981 ctctctcttcctttttctctctctattgtttttgaccaataaaaagagagaaaaagaaggttgtcac 8456047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37727047 - 37726982
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcact 66  Q
    |||||||||||||| ||  |||  |||||| ||| ||||||||||||||||||||| ||| |||||    
T  37727047 ctctctcttcctttttccttctccattgttgttgatcaataaaaagagaggaaaaaagttatcact 37726982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 37989187 - 37989232
Alignment:
Q  27 tgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagt 72  Q
    |||||||||||||||||||| | ||||||| ||| |||||||||||    
T  37989187 tgttattgttcaataaaaagggtggaaaaaagttatcactaaaagt 37989232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4896493 - 4896411
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaa--aggttgtcactaaaagttgtttgaaat 82  Q
    |||||||||||||| |||||||  |||||| |||  |||| ||||||||| ||||  |||||||||| ||||||||||| ||||    
T  4896493 ctctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaaagaggttgtcac-aaaagttgtttcaaat 4896411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 54199174 - 54199274
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||| || |||| ||||||  ||||| |||||| |||||||||  || |||||||| | ||||  ||| |||| | ||||| ||||||||||||||||    
T  54199174 ctctctgtttctttttctctccctattgctattgtccaataaaaatggaagaaaaaggctctcacccaaaattgtctaaaattggttgtcaaaatatcat 54199273  T
Q  101 t 101  Q
    |    
T  54199274 t 54199274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 41317280 - 41317376
Alignment:
Q  5 ctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||| ||||||| |||||| |||||||||||| || |||| |||||| ||||| | ||||||||||  ||||| | |||||||||||||||    
T  41317280 ctcttcctttttctctctctattgtcattgttcaataagaatagagaaaaaagattgtcccaaaaagttgttgaaaattggatgtcaaaatatcatt 41317376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4969527 - 4969426
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||||||||| ||| ||||||| |||||||||||| |||||| || | ||| ||||| |||||||   |||||||||||||||| | |||||||||||||    
T  4969527 ctctctcttcttttttctctctctattgttattgtccaataagaataaaggaaaaaaagttgtcatccaaagttgtttgaaattggatgtcaaaatatca 4969428  T
Q  100 tt 101  Q
    ||    
T  4969427 tt 4969426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 36003553 - 36003456
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||| ||| ||||| | ||||||||||||||||||| ||  ||| ||||| ||||||||  ||| || ||||||||||  |||||||||||||||    
T  36003553 tctcttcttttttctctttctattgttattgttcaataagaatggagaaaaaaagttgtcacccaaaattatttgaaattaaatgtcaaaatatcatt 36003456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 15260387 - 15260484
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    |||||||||||||||||||||||  | ||||||| ||||||||||  || |||||| || || |||||| || ||| ||||| ||||| |||||||||||    
T  15260387 tctctcttcctttctctctctat--tattattgtccaataaaaaggaagaaaaaagattatccctaaaaattatttaaaattggttgttaaaatatcatt 15260484  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40210060 - 40209962
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagagga-aaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    |||| |||| |||| ||||||| |||||||||||| |||||| ||||||||| |||||||||||| || || ||||||||  || |||||| ||||||||    
T  40210060 ctctttctttctttttctctctctattgttattgtccaataagaagagaggaaaaaaggttgtcaatagaa-ttgtttgattttggttgtccaaatatca 40209962  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 7438658 - 7438745
Alignment:
Q  12 tttctctctctatattgttattgttcaataaaaagagag-gaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatca 99  Q
    ||||||| ||| |||||||||||| |||| |||||||||  |||||||||||| || |||||||||| |  || |||||||||||||||    
T  7438658 tttctctttctctattgttattgtccaatgaaaagagagaaaaaaaggttgtccct-aaagttgttttattttggttgtcaaaatatca 7438745  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 36193718 - 36193618
Alignment:
Q  1 ctctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    |||||||||| ||| ||||||| ||||| |||||| |||||| ||  |||||||||| || | |   |||||||| | ||||| ||||||||||||||||    
T  36193718 ctctctcttcatttttctctctctattgctattgtccaataagaatggaggaaaaagattataatccaaagttgtctaaaattggttgtcaaaatatcat 36193619  T
Q  101 t 101  Q
    |    
T  36193618 t 36193618  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 6365265 - 6365346
Alignment:
Q  2 tctctcttcctttctctctctatattgttattgttcaataaaaagagaggaaaa--aggttgtcactaaaagttgtttgaaat 82  Q
    ||||||||||||| |||||||  |||||| |||  |||||||||||||| ||||  ||||||||| |||||||||||| ||||    
T  6365265 tctctcttcctttttctctcttcattgtttttgaccaataaaaagagagaaaaaagaggttgtca-taaaagttgttttaaat 6365346  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37468239 - 37468158
Alignment:
Q  16 tctctctatattgttattgttcaataaaaagagagg-aaaaaggttgtcactaaaagttgtttgaaattagttgtcaaaatatcat 100  Q
    ||||||| |||||||||||| ||||   |||||||| |||||||||||||| ||||||||||| ||||| |||||  |||||||||    
T  37468239 tctctctctattgttattgtccaat---aagagaggaaaaaaggttgtcac-aaaagttgtttcaaattggttgtacaaatatcat 37468158  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 11152689 - 11152644
Alignment:
Q  4 tctcttcctttctctctctatattgttattgttcaataaaaagaga 49  Q
    ||||||||||| ||||||||||||||| |||  |||||||||||||    
T  11152689 tctcttcctttttctctctatattgtttttgaccaataaaaagaga 11152644  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 30415109 - 30415192
Alignment:
Q  18 tctctatattgttattgttcaataaaaagagaggaaaaa-ggttgtcactaaaagttgtttgaaattagttgtcaaaatatcatt 101  Q
    ||||||||||||| |||| |||||| || |||| ||||| ||||||||| ||||||||| | ||||| |||||  ||||||||||    
T  30415109 tctctatattgtttttgtccaataataaaagagaaaaaatggttgtcac-aaaagttgtctaaaatttgttgtacaaatatcatt 30415192  T

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