View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_16 (Length: 264)
Name: NF13822_low_16
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 1984671 - 1984434
Alignment:
| Q |
17 |
aaactcaagtactctaaagaacaaaacacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctaca |
116 |
Q |
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| T |
1984671 |
aaactctagtactctaaagaacaaaacacccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgca |
1984572 |
T |
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| Q |
117 |
aatggaagcatatcaagcattaattttgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaact |
216 |
Q |
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| T |
1984571 |
aaaggaagcatatcaagcattagttttgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaact |
1984472 |
T |
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| Q |
217 |
tggttgcatacgaatcatcggttggatccggacctttg |
254 |
Q |
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| T |
1984471 |
tggttgcatacgaatcatcggttggatcgggacctttg |
1984434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 1977724 - 1977513
Alignment:
| Q |
43 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
142 |
Q |
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| T |
1977724 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
1977625 |
T |
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| Q |
143 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
242 |
Q |
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| T |
1977624 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
1977525 |
T |
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| Q |
243 |
tccggacctttg |
254 |
Q |
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| T |
1977524 |
tcgggacctttg |
1977513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 1948696 - 1948889
Alignment:
| Q |
57 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
156 |
Q |
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| T |
1948696 |
gaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcatatcaagtattagttttgatgcaaaaacaa |
1948795 |
T |
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| Q |
157 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacc |
250 |
Q |
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| T |
1948796 |
gaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatgaatcatcggttggatcgggacc |
1948889 |
T |
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