View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_17 (Length: 262)
Name: NF13822_low_17
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 1984422 - 1984172
Alignment:
| Q |
1 |
ttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaa |
100 |
Q |
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| T |
1984422 |
ttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaagagtgatcaagaa |
1984323 |
T |
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| Q |
101 |
gtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataata |
200 |
Q |
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| T |
1984322 |
gtggctaacatgtggaatggaatgagcaagttattgagattgtcaagggtaccattcttggataagactattgaagatgtaaaccagagttataataata |
1984223 |
T |
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| Q |
201 |
caatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
251 |
Q |
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| T |
1984222 |
caatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
1984172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 1977501 - 1977251
Alignment:
| Q |
1 |
ttacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaa |
100 |
Q |
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| T |
1977501 |
ttacacagaattgatgaatggaatcatagactccgagaaagatgcaaagattctaagagaaaaagggattattctaaatcacttaaagagtgatcaagaa |
1977402 |
T |
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| Q |
101 |
gtggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataata |
200 |
Q |
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| T |
1977401 |
gtggctaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataata |
1977302 |
T |
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| Q |
201 |
caatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
251 |
Q |
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| T |
1977301 |
caatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
1977251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 1948906 - 1949155
Alignment:
| Q |
2 |
tacacggaattgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaag |
101 |
Q |
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||||| ||||||||||||||||||||||| || || | ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
1948906 |
tacaccgaattgatgaatggaattatagactcggaagatgatgcgaagattctaagagaaaaagggattattttaaatcacttgaaaagtgataaagaag |
1949005 |
T |
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| Q |
102 |
tggccaacatgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataatac |
201 |
Q |
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| T |
1949006 |
ttgctgatatgtggaatggaatgagcaagtcattgagattatcaagggtattgttcttggataagactattgaagatgttaacaagttttataatagtag |
1949105 |
T |
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| Q |
202 |
aatgaagatcaagatttggaaatttatgaagtcttatgtgtttggttcat |
251 |
Q |
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| T |
1949106 |
aatgaaggtgaaaatgttgaaatttatgaagtcttatgtgtttggttcat |
1949155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 5625935 - 5626108
Alignment:
| Q |
11 |
ttgatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaaca |
110 |
Q |
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| T |
5625935 |
ttgatgaatggaatcatagacactgaggaagatgcaaggattcttagagaaaaaggggttattttgaaccatttaaaaagtgatcaagaggtggctaatt |
5626034 |
T |
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| Q |
111 |
tgtggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaac |
184 |
Q |
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| T |
5626035 |
tgtggaatggaatgaacaaatccatcaaattgacaagggttccattcttggataaggtcattgaggatgttaac |
5626108 |
T |
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