View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13822_low_18 (Length: 250)
Name: NF13822_low_18
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_18 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 6490021 - 6490257
Alignment:
| Q |
8 |
agattatactttacataatttaaagcattctgcaaactttgtcaaattatttttctggattttagtagtattgcactataagaatctagagtatgatgcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6490021 |
agattatactttacataatttaaagcattctgcaaactttgtcaaattatttttctggattttagtagtattgcactataagaatctagagtatgatgcc |
6490120 |
T |
|
| Q |
108 |
aaggaactctacatgtgaagttaacactaatttttgtccttttttgcttataagttataagccatttccattaatatttgttctcttacaaaaatgttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6490121 |
aaggaactctacatgtgaagttaacactaatttttgtccttctttgctgataagttataagccatttcc------atttgttctcttacaaaaatgttga |
6490214 |
T |
|
| Q |
208 |
ttactaaatccttattggttcttctttaatttatgttagaagc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6490215 |
ttactaaatccttattggttcttctttaatttatgttagaagc |
6490257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 38700670 - 38700427
Alignment:
| Q |
8 |
agattatactttacataatttaaagcattctgcaaactttgtcaaattatttttctggattttagtagtattgcactataagaatctagagtatgatgcc |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
38700670 |
agattatactttacataatttaaggcattctgcaa-ctttgtcaaattatttttctggattttagtagtattggactacaagaatctagagtatgatgcc |
38700572 |
T |
|
| Q |
108 |
aaggaactctacat--------gtgaagttaacactaatttttgtccttttttgcttataagttataagccatttccattaatatttgttctcttacaaa |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||| |||| | |||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
38700571 |
aaggaactctacatgtgattatgtgaagttaacactatttttcgtccttctttgttgataagttataagccatttcc------acttgttctcttacaaa |
38700478 |
T |
|
| Q |
200 |
aatgttgattactaaatccttattggttcttctttaatttatgttagaagc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38700477 |
aatgttgattactaaatccttattggttcttctttaatttatgttagaagc |
38700427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University