View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_3 (Length: 652)
Name: NF13822_low_3
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 16 - 628
Target Start/End: Complemental strand, 2705840 - 2705228
Alignment:
| Q |
16 |
atcctctacttttttatttcataagaaagtgcttattcttttaattatagtgaagaatttaaggcttatcaatcatctttcaggtttcaagagatagtac |
115 |
Q |
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| T |
2705840 |
atcctctacttttttatttcataagaaagtgcttattcttttaattatagtgaagaatttaaggcttatcaatcatctttcaggtttcaagagatagtac |
2705741 |
T |
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| Q |
116 |
ctttgaagacctcaacagtaataggggcagaagatccatcagtggcaacaaattggaataatcttataggaaaaaccctaaacaacaaatttgatttccc |
215 |
Q |
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| T |
2705740 |
ctttgaagacctcaacagtaataggggcagaagatccatcagtggcaacaaattggaataatcttataggaaaaaccctaaacaacaaatttgatttccc |
2705641 |
T |
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| Q |
216 |
atggttaacacctatgttaaattcatccttaccaaatgatcaagaaaattatcaaaacattggaggaaatgaaaccaacaaaaataagtacaagatggta |
315 |
Q |
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| T |
2705640 |
atggttaacacctatgttaaattcatccttaccaaatgatcaagaaaattatcaaaacattggaggaaatgaaaccaacaaaaataagtacaagatggta |
2705541 |
T |
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| Q |
316 |
gctagtnnnnnnntggttggagtattcataagtgtatggttaaaagaacaagtgttggaaaaatattgtgtttcaaatgtgagagtttgttcagttgcat |
415 |
Q |
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| T |
2705540 |
gctagtaaaaaaatggttggagtattcataagtgtatggttaaaagaacaagtgttggaaaaatattgtgtttcaaatgtgagagtttgttcagttgcat |
2705441 |
T |
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| Q |
416 |
gtggtgttatgggatatttaggaaacaaaggttgtgttggagttagtatgttgattgaaggaacaagtttttgttttgttgttgcacatttagcttcagg |
515 |
Q |
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| T |
2705440 |
gtggtgttatgggatatttaggaaacaaaggttgtgttggagttagtatgttgattgaaggaacaagtttttgttttgttgttgcacatttagcttcggg |
2705341 |
T |
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| Q |
516 |
ggaaaagaaaggtgatgaaggtagaaggaatcatcaagttgaagaaatttttagaagaacatcttttcctaggaccacaaaacatcatcaacattatcct |
615 |
Q |
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| T |
2705340 |
ggaaaagaaaggtgatgaaggtagaaggaatcatcaagttgaagaaatttttagaagaacatcttttcctaggaccacaaaacatcatcaacattatcct |
2705241 |
T |
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| Q |
616 |
ctaacaatcttag |
628 |
Q |
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| T |
2705240 |
ctaacaatcttag |
2705228 |
T |
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