View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13822_low_4 (Length: 569)

Name: NF13822_low_4
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13822_low_4
NF13822_low_4
[»] chr2 (11 HSPs)
chr2 (18-557)||(36452349-36452883)
chr2 (400-472)||(37153924-37153996)
chr2 (400-471)||(7833325-7833396)
chr2 (400-471)||(44587673-44587744)
chr2 (400-469)||(25903729-25903798)
chr2 (405-474)||(45651020-45651089)
chr2 (406-458)||(4860275-4860326)
chr2 (401-469)||(8996794-8996862)
chr2 (405-441)||(12486065-12486101)
chr2 (412-440)||(41120030-41120058)
chr2 (424-472)||(41464756-41464804)
[»] chr1 (12 HSPs)
chr1 (380-474)||(101516-101610)
chr1 (381-474)||(101492-101584)
chr1 (381-474)||(40212293-40212386)
chr1 (390-470)||(35944074-35944154)
chr1 (409-472)||(22819176-22819239)
chr1 (406-474)||(39514974-39515042)
chr1 (395-463)||(50105685-50105753)
chr1 (383-430)||(897091-897138)
chr1 (408-440)||(8174165-8174197)
chr1 (381-473)||(22819174-22819266)
chr1 (410-474)||(35944090-35944154)
chr1 (405-473)||(51590471-51590539)
[»] chr4 (18 HSPs)
chr4 (18-218)||(19087212-19087412)
chr4 (400-472)||(12766883-12766955)
chr4 (400-474)||(54357924-54357998)
chr4 (413-474)||(6724914-6724975)
chr4 (363-471)||(50533369-50533475)
chr4 (409-468)||(10554940-10554999)
chr4 (409-474)||(12766884-12766949)
chr4 (405-469)||(20114104-20114168)
chr4 (405-440)||(21861120-21861155)
chr4 (405-440)||(21916983-21917018)
chr4 (409-472)||(56491115-56491178)
chr4 (405-471)||(26066412-26066478)
chr4 (424-474)||(54673350-54673400)
chr4 (400-469)||(4698668-4698737)
chr4 (405-474)||(20459055-20459124)
chr4 (405-441)||(15794799-15794835)
chr4 (423-471)||(30206525-30206573)
chr4 (400-456)||(45828473-45828529)
[»] chr8 (18 HSPs)
chr8 (409-472)||(30112380-30112443)
chr8 (408-471)||(27976764-27976827)
chr8 (408-471)||(28034033-28034096)
chr8 (405-471)||(27976765-27976831)
chr8 (405-471)||(28034034-28034100)
chr8 (380-469)||(325222-325311)
chr8 (405-474)||(9420626-9420695)
chr8 (372-431)||(41175193-41175252)
chr8 (400-474)||(14547793-14547867)
chr8 (405-470)||(27870980-27871045)
chr8 (410-471)||(27870980-27871041)
chr8 (408-441)||(28872189-28872222)
chr8 (407-471)||(27789320-27789384)
chr8 (409-473)||(43409877-43409941)
chr8 (412-474)||(1364161-1364223)
chr8 (409-471)||(10107319-10107377)
chr8 (405-441)||(289152-289188)
chr8 (405-469)||(10396831-10396895)
[»] chr3 (9 HSPs)
chr3 (383-474)||(45361988-45362079)
chr3 (405-467)||(36750790-36750852)
chr3 (405-474)||(28406506-28406575)
chr3 (405-474)||(32711242-32711311)
chr3 (400-469)||(48593187-48593256)
chr3 (409-471)||(32711245-32711307)
chr3 (383-472)||(45362013-45362101)
chr3 (400-464)||(1755893-1755957)
chr3 (400-440)||(26331248-26331288)
[»] chr7 (11 HSPs)
chr7 (400-474)||(47681557-47681631)
chr7 (409-474)||(47612330-47612395)
chr7 (409-474)||(35436262-35436327)
chr7 (375-472)||(37002870-37002967)
chr7 (407-471)||(7430087-7430151)
chr7 (380-468)||(37489783-37489871)
chr7 (400-471)||(37489812-37489883)
chr7 (420-474)||(28838165-28838219)
chr7 (400-474)||(35436256-35436330)
chr7 (405-474)||(40362009-40362078)
chr7 (372-432)||(26422114-26422173)
[»] chr5 (2 HSPs)
chr5 (400-472)||(12442276-12442348)
chr5 (383-472)||(6761051-6761140)
[»] scaffold0025 (1 HSPs)
scaffold0025 (400-474)||(65984-66058)
[»] chr6 (6 HSPs)
chr6 (409-474)||(20703440-20703505)
chr6 (405-469)||(1158284-1158348)
chr6 (416-468)||(2284822-2284874)
chr6 (405-464)||(29938661-29938720)
chr6 (400-474)||(6686855-6686929)
chr6 (400-473)||(20703434-20703507)
[»] scaffold0032 (1 HSPs)
scaffold0032 (412-474)||(47270-47332)


Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 36452883 - 36452349
Alignment:
Q  18 catcttccatttggttttccttccagatggagcttttcctatgtaaaacatcatggttttccttattccaatgactttgttgttagaagagtaaacgtag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36452883 catcttccatttggttttccttccagatggagcttttcctatgtaaaacaccatggttttccttattccaatgactttgttgttagaagagtaaacgtag 36452784  T
Q  118 ctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcctctcaactctctctcttgtcttggtgaaaagaaaaaccatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36452783 ctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcctctcaactctctatcttgtcttggtgaaaagaaaaaccatt 36452684  T
Q  218 gttccgtgtctccacgacatctctcccctgcaaatgctgattacaagcaagatatacattgtcatcatatatatgaaaagcttagatatgtgttataata 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36452683 gttccgtgtctccacgacatctctcccctgcaaatgctgattacaagcaagatatacattgtcatcatatatatgaaaagcttagacatgtgttataata 36452584  T
Q  318 tcttagaaaatatttacatgaatgacagtgtcaatcttagacatgtactacattcggtctcatatatatatgaaaagattagttttctagattcattgaa 417  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  36452583 tcttagaaaatatttacatgaatgaaagtgtcacccttagacatgtactacattcggtctcatat--atatgaaaagattagttttctagattcattgaa 36452486  T
Q  418 taattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacctnnnnnnng-aatatttttcttcatagctaattttatatttatt 516  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||       | || |  ||||||||||||||||||||    ||||    
T  36452485 taattgatgtatctgatctatattgttaaccagatacattacttatttaatgaacctaaaaaaagaaaaaaatttcttcatagctaatttta----tatt 36452390  T
Q  517 tctagtgttgtgagatattgaagtatattttgaatgagaat 557  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36452389 tctagtgttgtgagatattgaagtatattttgaatgagaat 36452349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 37153924 - 37153996
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    |||| |||||||||||||||| |||||||| |||| |  ||||| |  ||| |||||||||||||||||||||    
T  37153924 ttttttagattcattgaataaataatgtatatggttttcattgtaagtcaggtacattacttattcaatgaac 37153996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 7833396 - 7833325
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||| |||||| ||| |||| |||||||||||| |||||||| | || ||||||||| | ||||||||||||    
T  7833396 ttttttagatttattaaatagttaatgtatctgatctatattttaaatcagatacatcaattattcaatgaa 7833325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 471
Target Start/End: Original strand, 44587673 - 44587744
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||| ||| |||||||||||| | |||||| |||||||||||| | |||| |||||| ||| ||||||||||    
T  44587673 ttttttaggttcattgaataaatgatgtatgtggtctatattgatgaccacatacatcactcattcaatgaa 44587744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 25903798 - 25903729
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||| ||||| |||| ||||||||||||||||  |||  ||||| ||| |||||||||| ||||||||||    
T  25903798 ttttttagatacatttaataattaatgtatctactcttcattgtaaacgagatacattaattattcaatg 25903729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 45651089 - 45651020
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||| |||||||||| |||||||||||||||||| |  | ||||| ||| | ||||||||| |||||    
T  45651089 tagattctttgaataattgatgtatctggtctatattatagaacagattcatcagttattcaataaacct 45651020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 4860275 - 4860326
Alignment:
Q  406 agattcattgaataattaatgtatctggtctatattgttaaccagatacatta 458  Q
    ||||||||||||||| | |||||||||||||||| | | ||||||||||||||    
T  4860275 agattcattgaataactgatgtatctggtctata-tataaaccagatacatta 4860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 8996862 - 8996794
Alignment:
Q  401 tttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    ||||||||| ||||||||||| ||||||| | |||| |||| |  || |||||||||| ||||||||||    
T  8996862 tttctagatacattgaataatcaatgtatatagtctttattatagactagatacattaattattcaatg 8996794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 441
Target Start/End: Complemental strand, 12486101 - 12486065
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatatt 441  Q
    |||||||||||||||||| |||||| |||||||||||    
T  12486101 tagattcattgaataattgatgtatttggtctatatt 12486065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 41120058 - 41120030
Alignment:
Q  412 attgaataattaatgtatctggtctatat 440  Q
    |||||||||||||||||||||||||||||    
T  41120058 attgaataattaatgtatctggtctatat 41120030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 41464804 - 41464756
Alignment:
Q  424 atgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    |||||||| |||||||||  |||| |||||||||| |||||||||||||    
T  41464804 atgtatctagtctatatttataacgagatacattaattattcaatgaac 41464756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 474
Target Start/End: Complemental strand, 101610 - 101516
Alignment:
Q  380 tatatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||| |||||||||  |||  ||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||    
T  101610 tatatatacgaaaagattcttttcgtaggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaacct 101516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 101492 - 101584
Alignment:
Q  381 atatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||| |||||||||  |||| ||| |||||||||||||||||||||||||| || | ||| |||||||||||||| |||||||||||||||    
T  101492 atatataagaaaagattcttttt-taggttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattattcaatgaacct 101584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 40212293 - 40212386
Alignment:
Q  381 atatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||| ||||| |||| |||||||  || |||||||||||||| ||||||||||||||||| ||  | |||||||| |||||||||| ||||    
T  40212293 atatataagaaaatattatttttctaagtttattgaataattaatatatctggtctatattgtaaaaaaaatacattaattattcaatggacct 40212386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 35944074 - 35944154
Alignment:
Q  390 aaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatga 470  Q
    ||||||||  |||| ||| ||| |||||||||||||||||||| |||| ||||| || ||||||||||| |||||||||||    
T  35944074 aaaagattcattttttaggttcgttgaataattaatgtatctgatctacattgtaaagcagatacattaattattcaatga 35944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 22819176 - 22819239
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    ||||||||||||||||||||| ||||||  ||||| || |||||||||||  ||||||||||||    
T  22819176 ttcattgaataattaatgtatatggtcttcattgtaaatcagatacattaactattcaatgaac 22819239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 39515042 - 39514974
Alignment:
Q  406 agattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||||| ||||| || |||||||| | |||||| | |||||||||||||| |||||||| ||||||    
T  39515042 agattcattaaataactattgtatctgatatatattataaaccagatacattagttattcaacgaacct 39514974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 463
Target Start/End: Original strand, 50105685 - 50105753
Alignment:
Q  395 attagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttat 463  Q
    |||| |||| ||||||||||||||||| |||||||||| |||||| | | ||| |||||||||| ||||    
T  50105685 attaattttttagattcattgaataatcaatgtatctgatctataatataaactagatacattaattat 50105753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 430
Target Start/End: Complemental strand, 897138 - 897091
Alignment:
Q  383 atatatgaaaagattagttttctagattcattgaataattaatgtatc 430  Q
    ||||| |||||||||| |||| ||||| ||||||||||||||||||||    
T  897138 atataagaaaagattatttttttagatacattgaataattaatgtatc 897091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 8174197 - 8174165
Alignment:
Q  408 attcattgaataattaatgtatctggtctatat 440  Q
    ||||||||||| |||||||||||||||||||||    
T  8174197 attcattgaatgattaatgtatctggtctatat 8174165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 473
Target Start/End: Complemental strand, 22819266 - 22819174
Alignment:
Q  381 atatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacc 473  Q
    ||||||| |||||||||  |||| ||  ||||||||||| |||||||||||| | || | ||   |||| |||||||| ||||||||||||||    
T  22819266 atatataagaaaagattctttttttacgttcattgaatagttaatgtatctgatttacaatgaagaccatatacattaattattcaatgaacc 22819174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 474
Target Start/End: Complemental strand, 35944154 - 35944090
Alignment:
Q  410 tcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||||||||||||||||||| | || | |||  | ||||||||||| |||||||| ||||||    
T  35944154 tcattgaataattaatgtatctgctttacaatgtagatcagatacattaattattcaacgaacct 35944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 51590539 - 51590471
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacc 473  Q
    |||||||||||  ||| | |||||||| |||||||||  |||| |||||||||| |||||| |||||||    
T  51590539 tagattcattgtgtaagtgatgtatctagtctatatttataacaagatacattaattattctatgaacc 51590471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 19087212 - 19087412
Alignment:
Q  18 catcttccatttggttttccttccagatggagcttttcctatgtaaaacatcatggttttccttattccaatgactttgttgttagaagagtaaacgtag 117  Q
    |||||||||||| ||||||||||||  ||||||||||||| | || || | |||||||||| | |  ||||| |||||||| |  ||||| ||||| ||     
T  19087212 catcttccattttgttttccttccacttggagcttttcctttatagaaaaccatggttttcttcaccccaataactttgttatctgaagaataaacataa 19087311  T
Q  118 ctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcctctcaactctctctcttgtcttggtgaaaagaaaaaccatt 217  Q
    | ||||||||| || || ||||| || |||||||  || ||||| || ||||| ||||| ||    ||||||||||| | ||||||||||||||||||||    
T  19087312 ccaggagaacctgttgccttccagtatccacaagcagtagttctattaggtctccctccccttgcttctctctcttgacctggtgaaaagaaaaaccatt 19087411  T
Q  218 g 218  Q
    |    
T  19087412 g 19087412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 472
Target Start/End: Complemental strand, 12766955 - 12766883
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||| ||  |||||||||| |||||||||||||    
T  12766955 ttttttaggttcattgaataattaatgtatctggtctacattgtaaagtagatacattaattattcaatgaac 12766883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 54357924 - 54357998
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||| ||| |||||||| || ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||    
T  54357924 ttttttaggttcattgagtagttaatgtatctggtctacattgtaaaacagatacattaattattaaatgaacct 54357998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 474
Target Start/End: Original strand, 6724914 - 6724975
Alignment:
Q  413 ttgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||||||||||||||||||||| ||||  || |||||| |||| |||||||||||||||    
T  6724914 ttgaataattaatgtatctggtctacattgaaaaacagatatattaattattcaatgaacct 6724975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 471
Target Start/End: Complemental strand, 50533475 - 50533369
Alignment:
Q  363 tactacattcggtctcatatatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattactta 462  Q
    |||| |||||||||||| |||||   ||||| |||| |||| ||| |||||||| || ||||||||||||||||| ||||| || |||||| |||| |||    
T  50533475 tacttcattcggtctcaaatataa--gaaaatattatttttttaggttcattgagtagttaatgtatctggtctacattgtaaagcagatatattaatta 50533378  T
Q  463 ttcaatgaa 471  Q
    || ||||||    
T  50533377 tttaatgaa 50533369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 10554999 - 10554940
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaat 468  Q
    ||||||||||||||||||||||||||||  ||||| ||  |||||||||| |||||||||    
T  10554999 ttcattgaataattaatgtatctggtcttcattgtaaagtagatacattaattattcaat 10554940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 12766884 - 12766949
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||||||||||||  | || | |||  ||||||||||||| |||||||||||||||    
T  12766884 ttcattgaataattaatgtatctactttacaatgtagaccagatacattaattattcaatgaacct 12766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 469
Target Start/End: Complemental strand, 20114168 - 20114104
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||||| ||||||||| |||||||| ||||||||||| | ||||| |||||| | ||||||||||    
T  20114168 tagattaattgaataactaatgtatatggtctatattctaaaccaaatacataaattattcaatg 20114104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 21861155 - 21861120
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatat 440  Q
    |||||||||| |||||||||||||||||||||||||    
T  21861155 tagattcattaaataattaatgtatctggtctatat 21861120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 21917018 - 21916983
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatat 440  Q
    |||||||||| |||||||||||||||||||||||||    
T  21917018 tagattcattaaataattaatgtatctggtctatat 21916983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 56491115 - 56491178
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    ||||||| |||| |||||||||| |||||||||  |||| || ||||||| |||||||||||||    
T  56491115 ttcattgtataagtaatgtatctagtctatatttataacgaggtacattaattattcaatgaac 56491178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 26066478 - 26066412
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||||||||| ||||| | |||||||||||||||||| |  ||| ||||||| | ||||||||||||    
T  26066478 tagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaa 26066412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 54673400 - 54673350
Alignment:
Q  424 atgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||| |||||||||  |||| |||| |||||||||||||||||||||    
T  54673400 atgtatctagtctatatttataacgagatgcattacttattcaatgaacct 54673350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 4698737 - 4698668
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||| ||||| |||||||||||| |||||| ||||||| | | | |||||||||||| | ||||||||||    
T  4698737 ttttttagatacattgaataatttatgtatatggtctagaatctaaaccagatacataaattattcaatg 4698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 20459124 - 20459055
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||| || ||||||||||||||||| ||| | || || ||| |||| ||||| |||||||||    
T  20459124 tagattcattgagtagttaatgtatctggtctacattttaaaacatatatattaattatttaatgaacct 20459055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 15794799 - 15794835
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatatt 441  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  15794799 tagatacattgaataattaatgtatctggtctttatt 15794835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 30206525 - 30206573
Alignment:
Q  423 aatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    ||||||| ||||||||||| | |||||||||||| | ||||||||||||    
T  30206525 aatgtatttggtctatattataaaccagatacatcaattattcaatgaa 30206573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 456
Target Start/End: Complemental strand, 45828529 - 45828473
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacat 456  Q
    |||| |||||||||||| |||||||||||| ||||||||| | | ||||| ||||||    
T  45828529 ttttttagattcattgagtaattaatgtatttggtctataatataaaccaaatacat 45828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 30112380 - 30112443
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    ||||||||||||||||||||| ||||||| ||||||||  |||||||||| |||||||||||||    
T  30112380 ttcattgaataattaatgtatttggtctacattgttaaatagatacattaattattcaatgaac 30112443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 471
Target Start/End: Original strand, 27976764 - 27976827
Alignment:
Q  408 attcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    ||||||| ||||||||||| |||||||||||| |||  ||||||||||||| ||||||||||||    
T  27976764 attcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaa 27976827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 471
Target Start/End: Original strand, 28034033 - 28034096
Alignment:
Q  408 attcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    ||||||| ||||||||||| |||||||||||| |||  ||||||||||||| ||||||||||||    
T  28034033 attcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaa 28034096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 27976831 - 27976765
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    ||||||||||||||||||||||||||||||||| ||| |  ||||||| ||||| ||||| ||||||    
T  27976831 tagattcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaa 27976765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 28034100 - 28034034
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    ||||||||||||||||||||||||||||||||| ||| |  ||||||| ||||| ||||| ||||||    
T  28034100 tagattcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaa 28034034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 469
Target Start/End: Original strand, 325222 - 325311
Alignment:
Q  380 tatatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||||||| ||||| |||  |||| ||||| |||| |||||||||||||||| ||||  ||||| ||| |||||||||| ||||||||||    
T  325222 tatatataagaaaatattctttttttagatacatttaataattaatgtatctagtcttcattgtaaacgagatacattaattattcaatg 325311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 9420626 - 9420695
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||||||| |||| ||||||||||||||||||||  |||| || ||||||| |||||||| ||||||    
T  9420626 tagattcattgtataagtaatgtatctggtctatatttataacgaggtacattaattattcaaagaacct 9420695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 41175193 - 41175252
Alignment:
Q  372 cggtctcatatatatatgaaaagattagttttctagattcattgaataattaatgtatct 431  Q
    |||||||||||||||| |||||| ||  |||| |||||||||||||||||||| ||||||    
T  41175193 cggtctcatatatataagaaaagtttccttttttagattcattgaataattaacgtatct 41175252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 14547793 - 14547867
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||| ||| |||||||| || ||||| ||||||||||| ||||| || ||||||||||| ||||| |||||||||    
T  14547793 ttttttaggttcattgagtagttaatctatctggtctacattgtaaagcagatacattaattatttaatgaacct 14547867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 470
Target Start/End: Complemental strand, 27871045 - 27870980
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatga 470  Q
    ||||||||||||||||||||||||||||||||| ||| |  ||||||| | ||| ||||| |||||    
T  27871045 tagattcattgaataattaatgtatctggtctacattatagaccagatgctttaattatttaatga 27870980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 27870980 - 27871041
Alignment:
Q  410 tcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    ||||| ||||||||| | |||||||||||| |||  ||||||||||||| ||||||||||||    
T  27870980 tcattaaataattaaagcatctggtctataatgtagaccagatacattaattattcaatgaa 27871041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 441
Target Start/End: Complemental strand, 28872222 - 28872189
Alignment:
Q  408 attcattgaataattaatgtatctggtctatatt 441  Q
    ||||||||||||||||||||||||||||||||||    
T  28872222 attcattgaataattaatgtatctggtctatatt 28872189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 27789320 - 27789384
Alignment:
Q  407 gattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||||||||||||||| ||||||||||| |||| | || |||| |||||| | ||||||||||||    
T  27789320 gattcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaatgaa 27789384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 43409877 - 43409941
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacc 473  Q
    ||||||| |||| |||||||||| |||||||||  |||| || ||||||| ||||||||||||||    
T  43409877 ttcattgtataagtaatgtatctagtctatatttataacgaggtacattaattattcaatgaacc 43409941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 1364161 - 1364223
Alignment:
Q  412 attgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||||||| ||| ||| | ||| ||| | |||||||| |||||||||||||||    
T  1364161 attgaataattaatgtatttggactacaatgtaaactaaatacattatttattcaatgaacct 1364223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 10107377 - 10107319
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||||||||||| | ||||||||||||||||||    |||| |||||||| ||||||||||||    
T  10107377 ttcattgaataactgatgtatctggtctatatt----accatatacattaattattcaatgaa 10107319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 289152 - 289188
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatatt 441  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  289152 tagattcattgaatatttaatgtatttggtctatatt 289188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 10396831 - 10396895
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||||| ||||||||| |||||||| ||||||||||| | ||||| |||||| | || |||||||    
T  10396831 tagattaattgaataactaatgtatatggtctatattctaaaccaaatacataaattgttcaatg 10396895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 383 - 474
Target Start/End: Original strand, 45361988 - 45362079
Alignment:
Q  383 atatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||| |||||||||  |||| ||  |||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||| |||||    
T  45361988 atataagaaaagattcattttttaagttcattgagtaattaatgtatctggtctacattgtaaagcagatacattaattattcaattaacct 45362079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 467
Target Start/End: Complemental strand, 36750852 - 36750790
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaa 467  Q
    |||||||||||| || |||||||||||| |||| ||||| || ||||||||||| ||||||||    
T  36750852 tagattcattgagtagttaatgtatctgatctacattgtaaagcagatacattaattattcaa 36750790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 28406506 - 28406575
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||| ||||||||||||||||| ||||||||||| |  ||| | ||||| | |||||||||||||||    
T  28406506 tagattcgttgaataattaatgtatttggtctatattctagaccgggtacataaattattcaatgaacct 28406575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 32711311 - 32711242
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||||||| |||||||||||||||| | |   ||| |||||| | |||||||||||||||    
T  32711311 tagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacct 32711242  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 48593256 - 48593187
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||| |||||||||||||||||| |||||| ||||||||||| |  ||| ||||||| | ||||||||||    
T  48593256 ttttttagattcattgaataatttatgtatttggtctatattctagacccgatacatcaattattcaatg 48593187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 471
Target Start/End: Original strand, 32711245 - 32711307
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||||||||||||| |||||| ||| ||||||| |  ||||||||||| | ||||||||||||    
T  32711245 ttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaa 32711307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 472
Target Start/End: Complemental strand, 45362101 - 45362013
Alignment:
Q  383 atatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    ||||| |||||||||  |||| ||| || ||||||||||||||||||||| | || | |||  ||||||||||||| ||| |||||||||    
T  45362101 atataagaaaagattcttttt-taggttaattgaataattaatgtatctgctttacaatgtagaccagatacattaattactcaatgaac 45362013  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 1755893 - 1755957
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttatt 464  Q
    ||||||||||||||| |||||||||||||| ||||| ||| |    ||||||||||||| |||||    
T  1755893 ttttctagattcattcaataattaatgtatttggtccataatacagaccagatacattagttatt 1755957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 26331248 - 26331288
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatat 440  Q
    |||||||| |||||||||| | |||||||||||||||||||    
T  26331248 ttttctaggttcattgaatgactaatgtatctggtctatat 26331288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 47681631 - 47681557
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||| |||||||||||| || ||||||||||||||| ||||||| || ||||||||||| ||||| ||| |||||    
T  47681631 ttttttagattcattgagtagttaatgtatctggtcgatattgtaaagcagatacattaattatttaataaacct 47681557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 47612395 - 47612330
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||| |||| |||||||||| |||||||||  |||| |||||||||| |||||||||||||||    
T  47612395 ttcattgtataagtaatgtatctagtctatatttataacgagatacattaattattcaatgaacct 47612330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 35436327 - 35436262
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||| |||||||| || |||| | || ||||||||||| | |||||||||||||||    
T  35436327 ttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaacct 35436262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 472
Target Start/End: Original strand, 37002870 - 37002967
Alignment:
Q  375 tctcatatatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    ||||||||||||| ||||| |||  |||| ||| ||||||||||||||||| ||| | ||||| ||||| ||  | |||||||| ||||| |||||||    
T  37002870 tctcatatatataagaaaatattctttttataggttcattgaataattaatatattttgtctacattgtaaaataaatacattatttatttaatgaac 37002967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 7430151 - 7430087
Alignment:
Q  407 gattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||||||| ||||| | |||||||||||||||||||| ||||| |||||| | ||||||| ||||    
T  7430151 gattcattaaataactgatgtatctggtctatattgtaaaccaaatacataaattattcactgaa 7430087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 468
Target Start/End: Original strand, 37489783 - 37489871
Alignment:
Q  380 tatatatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaat 468  Q
    |||||||| ||||| |||| |||  || |||||||||||||||||| ||||| ||  | ||||| || ||||||||||| |||||||||    
T  37489783 tatatataagaaaatattattttcttaaattcattgaataattaatatatctagttcacattgtaaaacagatacattaattattcaat 37489871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 37489883 - 37489812
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaa 471  Q
    |||| |||||| ||||||||||||||||||||| | || | ||| ||| ||||| |||| ||||||||||||    
T  37489883 ttttttagattgattgaataattaatgtatctgttttacaatgtgaactagatatattaattattcaatgaa 37489812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 474
Target Start/End: Original strand, 28838165 - 28838219
Alignment:
Q  420 attaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||||||  ||||| ||| |||||||||| |||||||||| ||||    
T  28838165 attaatgtatctggtcttcattgtaaacgagatacattaattattcaatgtacct 28838219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 35436256 - 35436330
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||| ||| |||||||||||| | |||||||||||| ||||| |  || |||||||| | |||||||||||||||    
T  35436256 ttttttaggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaacct 35436330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 40362009 - 40362078
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||||||| |||||| || | ||||||||  |||| |||||||| | ||||||| |||||    
T  40362009 tagattcattgaataattgatgtatttgatttatattgtagaccaaatacattaatcattcaataaacct 40362078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 26422173 - 26422114
Alignment:
Q  372 cggtctcatatatatatgaaaagattagttttctagattcattgaataattaatgtatctg 432  Q
    |||||||||||||||| | |||||||  |||| ||| || |||||||||||||||||||||    
T  26422173 cggtctcatatatataaggaaagattcttttt-taggttaattgaataattaatgtatctg 26422114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 472
Target Start/End: Complemental strand, 12442348 - 12442276
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    |||| ||| |||||||| || ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  12442348 ttttttaggttcattgagtagttaatgtatctggtctacattgtaaaacagatacattaattatttaatgaac 12442276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 472
Target Start/End: Original strand, 6761051 - 6761140
Alignment:
Q  383 atatatgaaaagattagttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaac 472  Q
    ||||| || |||| || |||| ||| ||||||||||||||||| ||| ||| ||| | ||| ||| | |||||||| |||||||||||||    
T  6761051 atataagagaagaatatttttttaggttcattgaataattaatatatttggactacaatgtaaactaaatacattatttattcaatgaac 6761140  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 65984 - 66058
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||| ||||||||||||| |||| |||||||| ||||||||| | ||||  |||||| | |||||||||||||||    
T  65984 ttttttagattcattgaaaaattcatgtatctagtctatattttaaaccgaatacataaattattcaatgaacct 66058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 20703505 - 20703440
Alignment:
Q  409 ttcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    ||||||||||| ||||||||| ||||||||||| |  |||| ||||||||  ||||||||||||||    
T  20703505 ttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacct 20703440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 1158284 - 1158348
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatg 469  Q
    |||||||||||||||||||||||||  |||||||||| |  |||| |||||| | ||||||||||    
T  1158284 tagattcattgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaatg 1158348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 2284874 - 2284822
Alignment:
Q  416 aataattaatgtatctggtctatattgttaaccagatacattacttattcaat 468  Q
    ||||||||||||||||| |||||||| | || ||||||||||| |||||||||    
T  2284874 aataattaatgtatctgatctatattataaatcagatacattaattattcaat 2284822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 29938720 - 29938661
Alignment:
Q  405 tagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttatt 464  Q
    ||||| ||||||||||||||||||||| |||| ||||||  || |||||||||| |||||    
T  29938720 tagatacattgaataattaatgtatctagtctttattgtatactagatacattaattatt 29938661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 6686929 - 6686855
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||| ||| ||||||||||||||||||||| ||| ||| | ||| ||| | |||||| | |||||||||||||||    
T  6686929 ttttttaggttcattgaataattaatgtatttggactacaatgtaaactaaatacatcatttattcaatgaacct 6686855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 20703434 - 20703507
Alignment:
Q  400 ttttctagattcattgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacc 473  Q
    |||| ||| ||||||||||| ||||||||| ||||||||| | |  |||| ||||||||  |||||||||||||    
T  20703434 ttttttaggttcattgaatatttaatgtatttggtctataatatagaccaaatacattaaatattcaatgaacc 20703507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 47332 - 47270
Alignment:
Q  412 attgaataattaatgtatctggtctatattgttaaccagatacattacttattcaatgaacct 474  Q
    |||||||||||||||||| ||||||| ||| | || |||| | |||| |||||||||||||||    
T  47332 attgaataattaatgtatttggtctacattttaaaacagaaatattaattattcaatgaacct 47270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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