View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_5 (Length: 531)
Name: NF13822_low_5
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 36135105 - 36135632
Alignment:
| Q |
1 |
agagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatata--------------gtccaaata |
86 |
Q |
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| T |
36135105 |
agagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatatatagaatttatgagtgtccaaata |
36135204 |
T |
|
| Q |
87 |
caaaagttgtttaagtaattgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaaa |
186 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135205 |
taaaagttgtttaagtaattgataaaagtatttctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaaa |
36135304 |
T |
|
| Q |
187 |
aatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattatgggaagttgtgattttcaa |
286 |
Q |
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| T |
36135305 |
aatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttgtttttt-ggaggaggtaatatattattatgggaagttgtgattttcaa |
36135403 |
T |
|
| Q |
287 |
ccatattttttattttgcaaaatctcttaaaaatatttggttatttcaagttgatcatttgataagtcggaatcatatattcaagcgcattgttatattg |
386 |
Q |
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| T |
36135404 |
ccatattttttattttgcaagatctcttaaaaataattggttatttcaagttgatcatttgataagtcggaatcatatattcaagcgcattgttatattg |
36135503 |
T |
|
| Q |
387 |
ataaaagcttggtgttaccatgagagtcgtctcttgggttctaagagcggactcttttcaacttatgtgttggaaattttagtcctctacatatttaatc |
486 |
Q |
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| T |
36135504 |
ataaaagcttggtgttaccatgagagtcgtctcttgggttctaagagtggactcttttcaacttatgtgttggaaattttagtcctctacatatttaatc |
36135603 |
T |
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| Q |
487 |
tttacaacaatgaatttgttggaccattt |
515 |
Q |
| |
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| T |
36135604 |
tttacaacaatgaatttgttggaccattt |
36135632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 106 - 512
Target Start/End: Original strand, 41336660 - 41337061
Alignment:
| Q |
106 |
tgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaaaaatttgtaattgacatatc |
205 |
Q |
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| T |
41336660 |
tgataaaaatatttttcaaccttcgcgtgttttttgtt---gttcaatgccaggtgaagatcattaagtgcttggttgaaaaatttgtaattgacatatc |
41336756 |
T |
|
| Q |
206 |
tttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattatgggaagttgtgattttcaaccatatttt-ttattttgc |
304 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| | |||||||||||| ||| |||||||| ||||||||| |
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| T |
41336757 |
tttcaaccaattgagtggtttatgctcactttgtttttt-ggacgaggtaatat-ttattatagtaagttgtgattt-caagcatatttttttattttgc |
41336853 |
T |
|
| Q |
305 |
aaaatctcttaaaaatatttggttatttcaagttgatcatttgataagtcggaatcatatattcaagcgcattgttatattgataaaagcttggtgttac |
404 |
Q |
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| T |
41336854 |
aagatctctaaaaaataatcgattattgcaggttgattatttgataagtcggaatcatatattcaagcgcagtgttatattgataaaagcttggtgttac |
41336953 |
T |
|
| Q |
405 |
catgagagtcgtctcttgggttctaagagcggactcttttcaacttatgtgttggaaattttagtcctctacatatttaatctttacaacaatgaatttg |
504 |
Q |
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| T |
41336954 |
catgagagtcgtctcttgggttctaagagtggactcttttcaacttatgcgttggaaattttagtcctatacttatttaatctttacaacaatgaatttg |
41337053 |
T |
|
| Q |
505 |
ttggacca |
512 |
Q |
| |
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| T |
41337054 |
ttggacca |
41337061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 10136129 - 10136077
Alignment:
| Q |
357 |
aatcatatattcaagcgcattgttatattgataaaagcttggtgttaccatga |
409 |
Q |
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|||||| |||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
10136129 |
aatcatttattcaagcgtagcattatattgataaaagcttggtgttactatga |
10136077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 6463169 - 6463213
Alignment:
| Q |
5 |
tgatgtgataaatgtgatatgttaataatataatggaaacaaaga |
49 |
Q |
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| T |
6463169 |
tgatgtgataaatgtgatatgttaatgatgtaatgggaaaaaaga |
6463213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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