View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_6 (Length: 527)
Name: NF13822_low_6
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 519
Target Start/End: Complemental strand, 36423789 - 36423286
Alignment:
| Q |
16 |
catgtagtaagcattccttggacaatcatttaaagggtctaaaggcattgcttgcaaaccaaatccatactcaccagcatccatgtatgtcttaaaatac |
115 |
Q |
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| T |
36423789 |
catgtagtaagcatttcttggacaatcatttaaagggtctaaaggcattgcttgcaaaccaaatccatactcaccagcatccatgtatgtcttaaaatac |
36423690 |
T |
|
| Q |
116 |
catccatcagtaggatccatataaggcacaaaaagttcagaagtgaaccctttgtaaataacatttctcatctctaatgtatctggatctctcactttag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423689 |
catccatcagtaggatccatataaggcacaaaaagttcagaagtgaaccctttgtaaataacatttctcatctctaatgtatctggatctctcactttag |
36423590 |
T |
|
| Q |
216 |
cttgagaaataatggttccagctctagggtcgggtttgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423589 |
cttgagaaataatggttccagctctagggtcgggtttgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttt |
36423490 |
T |
|
| Q |
316 |
tggttgttccaaggaaattggatttatcaagttcaactctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423489 |
tggttgttccaaggaaattggatttatcaagttcaactctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatg |
36423390 |
T |
|
| Q |
416 |
tttagtccattatctgtaatggacacaacctctctcttatccatatcaaccaacacagttaaaccttctatcggtttcatgtagaaattgacagtgcctt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423389 |
tttagtccattatctgtaatggacacaacctctctcttatccatatcaaccaacacagttaaaccttctatcggtttcatgtagaaattgacagtgcctt |
36423290 |
T |
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| Q |
516 |
tgct |
519 |
Q |
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|||| |
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| T |
36423289 |
tgct |
36423286 |
T |
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