View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13822_low_9 (Length: 453)
Name: NF13822_low_9
Description: NF13822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13822_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 5452542 - 5452955
Alignment:
| Q |
20 |
tttaagagcaaatacagtaagcttcctttatgtatctggccacctaatttgtcatatactcccaatgaatataatgagtcatttatacagaaaaaattta |
119 |
Q |
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| T |
5452542 |
tttaagagcaaatacagtaagcttcctttatgtatctggccacctaatttgtcatatgctccaaatgaatatcatgggtcatttatacagacaaaattta |
5452641 |
T |
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| Q |
120 |
ttgccagcttcacgttttgtcccctggctttgttagggaagttatgttatagtttcaaaaacagctacaattagctcaagttaacttagtgaattactgt |
219 |
Q |
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| T |
5452642 |
ttgccagcttcacgttttgtcccctagctttgttagggaagttatgttatagtttcaagaatagctacaattagctcaagttaacttagtgaagctctgt |
5452741 |
T |
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| Q |
220 |
caattgattggctcaatggggggaacgccattggaaaagaaaacattaactgtctaaatcacattttgtccccttacctgaattgcctctgccacattgg |
319 |
Q |
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| T |
5452742 |
caattgattggctcaa--gggggaacgccattgggcaaga------taactgtctaagtcacattttgtccccttagctgaattgcctctgccacattgg |
5452833 |
T |
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| Q |
320 |
gtttaatgtatgcagccatatcttactctttgttggatgtagtatttccaaattactcatgcacgcttctctccacccaaagttaagtttgttgtttccc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || |
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| T |
5452834 |
gtttaatgtatgcagccatatcttactctttgttggatgtagtatttccaaattactcatgcacgtagttctccacccaaagttacatttgttgttttcc |
5452933 |
T |
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| Q |
420 |
aatgttaa-gagtagttgagta |
440 |
Q |
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| T |
5452934 |
aatgttaaggagtagttgagta |
5452955 |
T |
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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 41392171 - 41392074
Alignment:
| Q |
263 |
cattaactgtctaaatcacattttgtccccttacctgaattgcctctgccacattgggtttaatgtatgcagccatatcttactctttgttggatgta |
360 |
Q |
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| T |
41392171 |
cattaactgtataaatcacactttgtcccctttgctaaatagcctgtgctacatagggtttaatgtatgcagccatatcttacttttggttggatgta |
41392074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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