View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13823_high_1 (Length: 713)

Name: NF13823_high_1
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13823_high_1
NF13823_high_1
[»] scaffold0783 (1 HSPs)
scaffold0783 (12-695)||(4802-5485)
[»] scaffold0006 (4 HSPs)
scaffold0006 (45-695)||(79239-79890)
scaffold0006 (419-612)||(192910-193101)
scaffold0006 (637-694)||(192846-192903)
scaffold0006 (91-148)||(130416-130473)
[»] chr1 (17 HSPs)
chr1 (425-566)||(13700773-13700915)
chr1 (449-582)||(13627200-13627334)
chr1 (449-567)||(13529952-13530071)
chr1 (628-694)||(13700625-13700691)
chr1 (628-694)||(13486590-13486656)
chr1 (640-695)||(13627107-13627162)
chr1 (94-191)||(19153506-19153603)
chr1 (421-477)||(14317168-14317224)
chr1 (461-527)||(20576067-20576133)
chr1 (637-692)||(13562655-13562710)
chr1 (76-166)||(13626766-13626856)
chr1 (91-148)||(13601759-13601816)
chr1 (338-397)||(13484356-13484413)
chr1 (627-695)||(19153856-19153924)
chr1 (456-507)||(13486755-13486806)
chr1 (334-397)||(13486853-13486916)
chr1 (286-321)||(14317035-14317070)


Alignment Details
Target: scaffold0783 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 12 - 695
Target Start/End: Complemental strand, 5485 - 4802
Alignment:
Q  12 cagagaggccaaaacacatgtatannnnnnnnnaaatgacatgaccaagatgaagaagcgtaaaagccttagtgacgaatgcttcattatcctactctag 111  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5485 cagagaggccaaaacacatgtatatttttttttaaatgacatgaccaagatgaagaagcgtaaaagccttagtgacgaatgcttcattatcctactctag 5386  T
Q  112 aatttaaatcttaaacttaaggagccaataagttttttccattcctttctctatttgcacttcttattttgaaaaaccctagggtatgcaagacccttat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5385 aatttaaatcttaaacttaaggagccaataagttttttccattcctttctctatttgcacttcttattttgaaaaaccctagggtatgcaagacccttgt 5286  T
Q  212 atgaatcagagacgatatatgtttgaaacttggcatgctatttggagtaagctgatattaaatacatctctttcaggtgcttgtcaattattttctgtac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5285 atgaatcagagacgatatatgtttgaaacttggcatgctatttggagtaagctgatattaaatacatctctttcaggtgcttgtcaattattttctgtac 5186  T
Q  312 tattttactcgtttatttttacttttgaaaattgtttcaaagattatgcagaaatttttaacagatttgtcttcttacaaatcaagaaaggaggttcggt 411  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  5185 tattttactcgtttatttttatttttgaaaattgtttcaaagattgtgcagaaatttttaacagatttgtctttttacaaatcaagaagggaggttcggt 5086  T
Q  412 cgcttggaagctgtagacatattgagtttacaatattcaactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttc 511  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5085 cgcttggaagctgtagacatattgagtttacaatagccaactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttc 4986  T
Q  512 ttctcagatacacttaaggtaagaatttttacaattatagtttagttgtcgttttccatagaattcattgtgatctccatttggtattttaagtgaattg 611  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4985 ttctcagatacacttaaggtaataatttttacaattatagtttagttgtcgttttccatagaattcattgtgatctccatttggtattttaagtgaattg 4886  T
Q  612 ccaaatagatatgctatgctatgtcatgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaattttc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4885 ccaaatagatatgctatgctatgtcatgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaattttc 4802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 45 - 695
Target Start/End: Complemental strand, 79890 - 79239
Alignment:
Q  45 aaatgacatgaccaagatgaagaagcgtaaaagccttagtgacgaatgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagt 144  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79890 aaatgacatgaccaagataaagaagcgtaaaagccttagtgacgaatgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagt 79791  T
Q  145 tttttccattcctttctctatttgcacttcttattttgaaaaaccctagggtatgcaagacccttatatgaatcagagacgatatatgtttgaaacttgg 244  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  79790 tttttctattcctttctctatttgcacttcttattttgaaaaaccctagggtatgcaagacccttgtatgaatcagagacgatatatgtttgaaacttgg 79691  T
Q  245 catgctatttggagtaagctgatattaaatacatctctttcaggt-gcttgtcaattattttctgtactattttactcgtttatttttacttttgaaaat 343  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  79690 catgctatttggagtgagctgatattaaatacatctctttcaggttgcttgtcaattattttctgtactattttactcgtttatttttatttttgaaaat 79591  T
Q  344 tgtttcaaagattatgcagaaatttttaacagatttgtcttcttacaaatcaagaaaggaggttcggtcgcttggaagctgtagacatattgagtttaca 443  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  79590 tgtttcaaagattgtgcagaaatttttaacagatttgtcttattacaaatcaagaagggaggttcggtcgcttggaagctgtagacatattgagtttaca 79491  T
Q  444 atattcaactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcagatacacttaaggtaagaatttttac 543  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  79490 atagccaactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcagatacacttaaggtaaaaatttttac 79391  T
Q  544 aattatagtttagttgtcgttttccatagaattcattgtgatctccatttggtattttaagtgaattgccaaatagatatgctatgctatgtcatgtttg 643  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  79390 aattatagtttagttgtcgttttccatagaattcattgtgatctccatttggtattctaagtgaattgccaaatagatatgccatgctatgtcatgtttg 79291  T
Q  644 gctgtggttagctcaaatagatatgtaaactagttaagagcaccgaattttc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79290 gctgtggttagctcaaatagatatgtaaactagttaagagcaccgaattttc 79239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 419 - 612
Target Start/End: Complemental strand, 193101 - 192910
Alignment:
Q  419 aagctgtagacatattgagtttacaatattcaactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcag 518  Q
    ||||| |||| |||||||||||  ||||   ||||||||  ||||||||||||||||||| ||| ||| |||||| |||| |||||| | || |||||||    
T  193101 aagctatagatatattgagtttgaaatagcgaactgacttaaagcatctccaagactgtcatataagtggaagcaataattccatatgtatttttctcag 193002  T
Q  519 atacacttaaggtaagaat-ttttacaattatagtttagttgtcgttttccatagaattcattgtgatctccatttggtattttaagtgaattgc 612  Q
    ||||||||||||||||||| ||||| ||||| |||||| || || |||||  | |||| || ||   | |||||||||||||| |||||||||||    
T  193001 atacacttaaggtaagaattttttaaaattaaagtttaattatctttttcagtggaatgcaatg---tttccatttggtatttgaagtgaattgc 192910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 192903 - 192846
Alignment:
Q  637 atgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaatttt 694  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||    
T  192903 atgtttggctgtagttagctcaaatagatatgtaaactagttatgaacaccaaatttt 192846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 130416 - 130473
Alignment:
Q  91 tgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagttttt 148  Q
    |||||||||||||||||| ||||||||  |||||| ||||||||||||| ||||||||    
T  130416 tgcttcattatcctactcaagaatttacctcttaatcttaaggagccaacaagttttt 130473  T

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Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 425 - 566
Target Start/End: Complemental strand, 13700915 - 13700773
Alignment:
Q  425 tagacatattgagtttacaatattcaactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcagatacac 524  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||| |||||| |||||||    
T  13700915 tagacatgttgagtttacaataaccaactgactgcaagcatctccaagactgtcatatcagcggaagcaataatgccatatatgtacttctcggatacac 13700816  T
Q  525 ttaaggtaagaattttt-acaattatagtttagttgtcgtttt 566  Q
    || |||||||||||||| ||||||| ||||||||| |||||||    
T  13700815 ttgaggtaagaatttttgacaattaaagtttagttatcgtttt 13700773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 449 - 582
Target Start/End: Complemental strand, 13627334 - 13627200
Alignment:
Q  449 caactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcagatacacttaaggtaagaat-ttttacaatt 547  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||    
T  13627334 caactgacttcaagcatctccaagactgtcatatcagtggaagcaataatgccatatatattcttctcagatacacttaaggtaagaattttttacgatt 13627235  T
Q  548 atagtttagttgtcgttttccatagaattcattgt 582  Q
    | ||||||| | |||||||   |||||||||||||    
T  13627234 aaagtttagatatcgttttaagtagaattcattgt 13627200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 449 - 567
Target Start/End: Complemental strand, 13530071 - 13529952
Alignment:
Q  449 caactgactgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcagatacacttaaggtaagaattttt-acaatt 547  Q
    ||||||||| |||| ||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13530071 caactgacttcaagaatctccaagactgtcatataagtggaagcaataatgccatatatattcttctcagatacacttaaggtaagaatttttgacaatt 13529972  T
Q  548 atagtttagttgtcgttttc 567  Q
    | ||||||||| || |||||    
T  13529971 aaagtttagttatctttttc 13529952  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 628 - 694
Target Start/End: Complemental strand, 13700691 - 13700625
Alignment:
Q  628 tgctatgtcatgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaatttt 694  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13700691 tgctatgttatgtttggccgtggttagctcaaatagatatgtaaactagttaagagcaccaaatttt 13700625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 628 - 694
Target Start/End: Complemental strand, 13486656 - 13486590
Alignment:
Q  628 tgctatgtcatgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaatttt 694  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  13486656 tgctatgttatgtttggcagtggttagctcaaatagatatgaaaactagttaagagcaccaaatttt 13486590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 695
Target Start/End: Complemental strand, 13627162 - 13627107
Alignment:
Q  640 tttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaattttc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  13627162 tttggctgtggttagctcaaatagatatgtaaactagttaagaacaccaaattttc 13627107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 19153603 - 19153506
Alignment:
Q  94 ttcattatcctactctagaatttaaatcttaaacttaaggagccaataagttttttccattcctttctctatttgcacttcttattttgaaaaaccct 191  Q
    ||||||||||||||| | ||||||  |||||| |||||||||| || |||||||| ||||||||| |||| || |  |||||||||||||||||||||    
T  19153603 ttcattatcctactcaacaatttacctcttaatcttaaggagcgaacaagtttttcccattccttgctcttttagtgcttcttattttgaaaaaccct 19153506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 14317168 - 14317224
Alignment:
Q  421 gctgtagacatattgagtttacaatattcaactgactgcaagcatctccaagactgt 477  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  14317168 gctgtagacatattgattttacaatagccaactgactgcaagcatctccaagactgt 14317224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 527
Target Start/End: Original strand, 20576067 - 20576133
Alignment:
Q  461 agcatctccaagactgtcctatcagtcgaagcagtaatgccatatatgttcttctcagatacactta 527  Q
    |||||| ||||||||||| ||| ||| |||||| ||||||||||||| |||||||||||||||||||    
T  20576067 agcatcgccaagactgtcatattagtggaagcaataatgccatatatattcttctcagatacactta 20576133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 637 - 692
Target Start/End: Complemental strand, 13562710 - 13562655
Alignment:
Q  637 atgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaatt 692  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  13562710 atgtttggttgtggttagcttaaatagatatgtaaattagttaagagcaccaaatt 13562655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 13626856 - 13626766
Alignment:
Q  76 agccttagtgacgaatgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagttttttccattcctttctctatt 166  Q
    ||||||| ||| || |||||||||||||||||  ||||||||  ||| |||||||||||||||| |||||||| |  |||||| |||||||    
T  13626856 agccttactgaagagtgcttcattatcctactaaagaatttacttctgaaacttaaggagccaacaagtttttccttttccttgctctatt 13626766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 13601759 - 13601816
Alignment:
Q  91 tgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagttttt 148  Q
    |||||||||||||||||| ||||||||  |||||| ||||||||||||| ||||||||    
T  13601759 tgcttcattatcctactcaagaatttacctcttaatcttaaggagccaacaagttttt 13601816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 13484356 - 13484413
Alignment:
Q  338 gaaaattgtttcaaagattatgcagaaatttttaacagatttgtcttcttacaaatcaag 397  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||||| |||| ||||||    
T  13484356 gaaaattgtttcaaagattatggagaaattgttaac--atttgtcttcatacagatcaag 13484413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 695
Target Start/End: Complemental strand, 19153924 - 19153856
Alignment:
Q  627 atgctatgtcatgtttggctgtggttagctcaaatagatatgtaaactagttaagagcaccgaattttc 695  Q
    ||||||||| |||||| ||||| ||| | |||| |||||||| ||||||||||| |||||| |||||||    
T  19153924 atgctatgttatgttttgctgttgttggttcaattagatatgaaaactagttaaaagcaccaaattttc 19153856  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 507
Target Start/End: Complemental strand, 13486806 - 13486755
Alignment:
Q  456 ctgcaagcatctccaagactgtcctatcagtcgaagcagtaatgccatatat 507  Q
    ||||||||||||| || | |||| |||||||||||||| |||||||||||||    
T  13486806 ctgcaagcatctcgaaaaatgtcatatcagtcgaagcaataatgccatatat 13486755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 13486916 - 13486853
Alignment:
Q  334 ttttgaaaattgtttcaaagattatgcagaaatttttaacagatttgtcttcttacaaatcaag 397  Q
    ||||||||||||||||||||||| || ||||||  |||||| |||||||||  |||| ||||||    
T  13486916 ttttgaaaattgtttcaaagattttgaagaaatcgttaacatatttgtctttatacagatcaag 13486853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 14317035 - 14317070
Alignment:
Q  286 aggtgcttgtcaattattttctgtactattttactc 321  Q
    ||||||||||||||||||||||||||| ||||||||    
T  14317035 aggtgcttgtcaattattttctgtactgttttactc 14317070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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