View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_high_11 (Length: 402)
Name: NF13823_high_11
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 334
Target Start/End: Complemental strand, 26572297 - 26571973
Alignment:
| Q |
10 |
gatcataggctgtgttccaatcaacaacaagctcattttcaatattcacatgtcatttatttccttaaccaaacaaccttgttctcataatgtctctctt |
109 |
Q |
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| T |
26572297 |
gatcataggttgtgttccaatcaacaaccagctcattttcaatattcacatgtcatttctttccttaaccaaacaaccttgttctcataatgtctctctt |
26572198 |
T |
|
| Q |
110 |
tttcttcttgaaaagaaatttagatgttatattcatttgaccatgcaacttaaacattattgtcattagctcttacatagcctcaggagttacaaggatt |
209 |
Q |
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| T |
26572197 |
tttcttcttgaaaagaaatttagatgttatattcatttgaccatgcaactcaaacattattgtcattagctcttacatagcctcaggagttacaaggatt |
26572098 |
T |
|
| Q |
210 |
gatgccatttctaactttaaggtttttatactgctttccttgaaatctcttttctttgtcacatcaatcttcaacatatatgtcttaaaggttggaaaca |
309 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26572097 |
gatgccatttctaactttaaggtttttatattgctttccttgaaatctcttttctttgtcacatcaatcttcaacatatatgtcttaaaggttggaaaca |
26571998 |
T |
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| Q |
310 |
tatcattgtcacatatatgtcccca |
334 |
Q |
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||||||||||||||||||||||||| |
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| T |
26571997 |
tatcattgtcacatatatgtcccca |
26571973 |
T |
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