View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_high_13 (Length: 374)
Name: NF13823_high_13
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 52900525 - 52900180
Alignment:
| Q |
11 |
taattctttaatgtattcttccattgtggcaacaaaagaaggtggtggctgtttattgtaggaaagaacttggtcacaaattattttatgtcaaaatgaa |
110 |
Q |
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| T |
52900525 |
taattctttaatgtattcttccattgtggcaacaaaagaaggcggtggctgtttattgtaggaaagaacttagtcacaaattattttatgtcaaaatgaa |
52900426 |
T |
|
| Q |
111 |
atataactattaacggccaacaaagaacctgtctcaaaactggaaattgaaaatttcttgcaaggtctaagcccttgcaatattcatagaaatcagcaag |
210 |
Q |
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| T |
52900425 |
atataactattaacggccaacaaagaacctgtctcaaaactggaaattgaaaatttcttgcaaggtctaagcccttgcaatattcatagaaatcagcaag |
52900326 |
T |
|
| Q |
211 |
acattcagcctgcatacatagcaaaaatattcatcaattgttaagcataaatataattcaatttggacaacaaggatgtgtgttacgtaaaacatcatta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52900325 |
acattcagcctgcatacatagcaaaaatattcatcaattgttaagcataaatataattcaatttggacaacaaggatgtgtgttacgtaaaacatcatta |
52900226 |
T |
|
| Q |
311 |
tgaacctgttggccagctcttttatatatatgcaaagcatttatag |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52900225 |
tgaacctgttggccagctcttttatatatatgcaaagcatttatag |
52900180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 16481753 - 16481795
Alignment:
| Q |
299 |
aaaacatcattatgaacctgttggccagctcttttatatatat |
341 |
Q |
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| T |
16481753 |
aaaacatcattacaaacctgttggccagctcttttatatatat |
16481795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 1368711 - 1368677
Alignment:
| Q |
13 |
attctttaatgtattcttccattgtggcaacaaaa |
47 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
1368711 |
attccttaatgtattcttccattgtggcaacaaaa |
1368677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 18179988 - 18180021
Alignment:
| Q |
14 |
ttctttaatgtattcttccattgtggcaacaaaa |
47 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
18179988 |
ttctttaatgtattcttccattgtagcaacaaaa |
18180021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 5646347 - 5646379
Alignment:
| Q |
15 |
tctttaatgtattcttccattgtggcaacaaaa |
47 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
5646347 |
tctttcatgtattcttccattgtggcaacaaaa |
5646379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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