View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_high_15 (Length: 369)
Name: NF13823_high_15
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_high_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 38 - 369
Target Start/End: Original strand, 4777070 - 4777401
Alignment:
| Q |
38 |
ggtggagcgggaccattggtttcctgtaactgtaagaagcagaaagctatggattttgggtgcaaggacgttaatgtttggaaagaagcactttcaactt |
137 |
Q |
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| T |
4777070 |
ggtggagcgggaccattggtttcctgtaactgtaagaagcagaaagctatggattttgggtgcaaggacgttaatgtttggaaagaagcactttcaactt |
4777169 |
T |
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| Q |
138 |
acacatctcaagtacaatcactttctctctccaaaaacaaacccaatttagtttctcttaaccaattttattgcaatgaactaccttccctcattcacca |
237 |
Q |
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| T |
4777170 |
acacatctcaagtgcaatcactttctctctccaaaaacaaacccaatttagtttctcttaaccaattttattgcaatgaactaccttccctcattcacca |
4777269 |
T |
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| Q |
238 |
acgaaaccctaacccttttatcactacccaagaactctccaaactcatgcaatggaaactcacacgtggcaaatggaggttaatcactcactcactcact |
337 |
Q |
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| T |
4777270 |
acgaaaccctaacccttttatcactacccaagaactctccaaactcatgcaatggaaactcacacgtggcaaatggaggttgatcactcactcactcact |
4777369 |
T |
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| Q |
338 |
ccttttattttattttatcttttgctatagaa |
369 |
Q |
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| T |
4777370 |
ccttttattttattttatcttttgctatagaa |
4777401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 4784644 - 4784703
Alignment:
| Q |
81 |
aagctatggattttgggtgcaaggacgttaatgtttggaaagaagcactttcaacttaca |
140 |
Q |
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| T |
4784644 |
aagctatggattttggattcaaggacgttagcgtttggaaggaagcgctttcaacttaca |
4784703 |
T |
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