View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13823_high_19 (Length: 332)

Name: NF13823_high_19
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13823_high_19
NF13823_high_19
[»] chr4 (10 HSPs)
chr4 (120-242)||(27554069-27554191)
chr4 (217-324)||(27553950-27554057)
chr4 (137-322)||(27497743-27497920)
chr4 (268-324)||(27447356-27447412)
chr4 (140-206)||(27431871-27431937)
chr4 (131-205)||(27556962-27557037)
chr4 (137-203)||(27503432-27503499)
chr4 (137-207)||(27524031-27524102)
chr4 (137-210)||(27514400-27514474)
chr4 (1-49)||(27445285-27445332)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 27554191 - 27554069
Alignment:
Q  120 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554191 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt 27554092  T
Q  220 aatattaatgcatgaacaaatat 242  Q
    ||||||| |||||||||||||||    
T  27554091 aatattagtgcatgaacaaatat 27554069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 27554057 - 27553950
Alignment:
Q  217 attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554057 attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat 27553958  T
Q  317 cctatgct 324  Q
    ||||||||    
T  27553957 cctatgct 27553950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 322
Target Start/End: Complemental strand, 27497920 - 27497743
Alignment:
Q  137 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtacgtaccaattaatattaatgcatgaa 235  Q
    ||||||||||| || ||||||||||||| |||||||||| |||||| ||  | ||||| |||| ||||| ||||  |||||||||||      |||||||    
T  27497920 acttaccagctagacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa-ttatggagtagctaccaattaat------gcatgaa 27497828  T
Q  236 caaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatg 322  Q
     |||||||||||| |  ||||||| || || |||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  27497827 -aaatatgaggttgcatttgtattcgagatagtttgatagggtagggtacaatctaagac-aacaccacattatatctcatcctatg 27497743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 27447356 - 27447412
Alignment:
Q  268 tttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatgct 324  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  27447356 tttgaaagggtggggtacaatctaagacaaacacttcatgatatctcatcctatgct 27447412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 27431871 - 27431937
Alignment:
Q  140 taccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaa 206  Q
    ||||||||||| |||||||||||||| |||||||||||||| | |  ||||||| ||||||||||||    
T  27431871 taccagctggacatcaacattatcaagatgaagaaacatgtataatgcatgtttacaaaattatgaa 27431937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 27557037 - 27556962
Alignment:
Q  131 ataataacttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatga 205  Q
    ||||| |||||||||||||| ||||||| ||||| ||||||| |||||||||| |  ||||||| |||||||||||    
T  27557037 ataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 27503432 - 27503499
Alignment:
Q  137 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattat 203  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||| |  ||||||| |||||||||    
T  27503432 acttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 27524031 - 27524102
Alignment:
Q  137 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaag 207  Q
    |||||||||||||| |||| |||||||| ||||||| |||||||||| |  ||||||| | |||||||||||    
T  27524031 acttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag 27524102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 27514400 - 27514474
Alignment:
Q  137 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtac 210  Q
    |||||| ||||||| |||| |||||||| |||| ||||| ||||||| |  ||||||| ||||||||||||||||    
T  27514400 acttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtac 27514474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27445285 - 27445332
Alignment:
Q  1 gtcttagatgattttctctcaattttctacgtcaaatgtcataataata 49  Q
    ||||||||||||||||||  ||||||| || ||||||||||||||||||    
T  27445285 gtcttagatgattttctca-aattttcaacatcaaatgtcataataata 27445332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University