View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_high_22 (Length: 304)
Name: NF13823_high_22
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 28858341 - 28858604
Alignment:
| Q |
26 |
gtttttgcaggaggtctatggtttgacccctaacaactaacttagtcactttgctcgnnnnnnnnggaaattggaaccattttatgcaaagtagatttga |
125 |
Q |
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| T |
28858341 |
gtttttgcaggaggtctatggtttgatccctaacaactaacttagtcactttgctcgaaaaaaacagaaattggaaccattttatgcaaagtagatttga |
28858440 |
T |
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| Q |
126 |
cacaacaagaaaccacattttggacacactaaacaacattaatgtaaatcaagacatcaaatggttaatgaacttcagataaggttgattcaaccgtaag |
225 |
Q |
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| T |
28858441 |
cacaacaagaaaccacattttggacacactaaacaacattaatgtaaatcaagacatcagatggttaatgaacttcagataaggttgattcaaccgtaag |
28858540 |
T |
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| Q |
226 |
tacttgaattcaactttgactggaacaatccttgatcaaactttacttacctctcagtcaaaat |
289 |
Q |
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| T |
28858541 |
tacttgaattcaactttgactggaacaatccttgatcaaactttacttacctctcagtcaaaat |
28858604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 28873803 - 28873945
Alignment:
| Q |
151 |
acactaaacaacattaatgtaaatc----aagacatcaaatggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgact |
246 |
Q |
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| T |
28873803 |
acactaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaact |
28873902 |
T |
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| Q |
247 |
ggaacaatccttgatcaaactttacttacctctcagtcaaaat |
289 |
Q |
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| T |
28873903 |
agaacagtccttgatcaaactctacttacctctcagtcaaaat |
28873945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 28842968 - 28843042
Alignment:
| Q |
99 |
gaaccattttatgcaaagtagatttgacacaacaagaaaccacattttggacacactaaacaacattaatgtaaa |
173 |
Q |
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| T |
28842968 |
gaaccattttatgtaaagtaaatccgatacaacaagaaaccacattatcgacacaccaaagaacattaatgtaaa |
28843042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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