View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13823_high_24 (Length: 300)

Name: NF13823_high_24
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13823_high_24
NF13823_high_24
[»] chr7 (2 HSPs)
chr7 (87-132)||(21284603-21284648)
chr7 (190-285)||(21284706-21284793)
[»] chr2 (1 HSPs)
chr2 (67-129)||(38007584-38007646)
[»] chr3 (1 HSPs)
chr3 (67-120)||(49282837-49282890)
[»] chr5 (1 HSPs)
chr5 (213-245)||(24168530-24168562)


Alignment Details
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 21284603 - 21284648
Alignment:
Q  87 aagttattgcatcatttccttcttcagcgtccatctctagtgtctc 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21284603 aagttattgcatcatttccttcttcagcgtccatctctagtgtctc 21284648  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 21284706 - 21284793
Alignment:
Q  190 tctttgttaatttatgaacatatatattattgatatgtgtagctttcaatattaaaatattaaattcctttaaaaagatatctgttaatttcaaac 285  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||| ||||||| || |||||||||||| ||||||| ||||||||||    
T  21284706 tctttgttaatttatgaacatat-------tgatatgtgtagctttcaatatt-aaatattcaagtcctttaaaaaggtatctgtcaatttcaaac 21284793  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 38007584 - 38007646
Alignment:
Q  67 ttccaactctctgttttccaaagttattgcatcatttccttcttcagcgtccatctctagtgt 129  Q
    ||||||||| ||||| || ||  |||| | |||||||||||||||||| ||||||||||||||    
T  38007584 ttccaactcactgttatcaaagattatagtatcatttccttcttcagcctccatctctagtgt 38007646  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 49282837 - 49282890
Alignment:
Q  67 ttccaactctctgttttccaaagttattgcatcatttccttcttcagcgtccat 120  Q
    ||||||||| ||||| |||||| |||| | |||||||||||||||||| |||||    
T  49282837 ttccaactcactgttatccaaaattatagtatcatttccttcttcagcctccat 49282890  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 24168530 - 24168562
Alignment:
Q  213 atattattgatatgtgtagctttcaatattaaa 245  Q
    |||||||||||||||||||||||| ||||||||    
T  24168530 atattattgatatgtgtagctttctatattaaa 24168562  T

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