View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_high_30 (Length: 246)
Name: NF13823_high_30
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 40635154 - 40635360
Alignment:
| Q |
17 |
atgttgatattaataattaggaggacatacacgttttgtcctcttcttcctaacttcttcatattccaaagtatttccttatggtttattatcatacaaa |
116 |
Q |
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| T |
40635154 |
atgttgatattaataattaggaggacatacacgttttgtcctcttcttcctaacttcttcatattccaaagtatttccttatggtt-attatcatacaaa |
40635252 |
T |
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| Q |
117 |
aaagtgtgtgcaaataaaattcaaaaaggagggttggaagcatgaagagtagttccttaatcatttggaaaaccaaaaccaaaagataaacaaattaatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40635253 |
aaagtgtgtgcaaataaaattcaaaaaggagggttggaagcatgaagagtagttccttaatcatttggaaaacgaaaaccaaaagataaacaaattaatt |
40635352 |
T |
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| Q |
217 |
aagcagag |
224 |
Q |
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|||||||| |
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| T |
40635353 |
aagcagag |
40635360 |
T |
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