View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13823_high_4 (Length: 507)

Name: NF13823_high_4
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13823_high_4
NF13823_high_4
[»] chr5 (6 HSPs)
chr5 (1-434)||(15641558-15642009)
chr5 (242-282)||(16773818-16773858)
chr5 (242-293)||(16457810-16457861)
chr5 (242-293)||(21549162-21549213)
chr5 (242-296)||(14495830-14495884)
chr5 (243-293)||(21589288-21589338)
[»] chr6 (8 HSPs)
chr6 (242-293)||(12234532-12234583)
chr6 (242-293)||(12188328-12188379)
chr6 (242-293)||(14557962-14558013)
chr6 (236-283)||(32613159-32613206)
chr6 (242-293)||(33549104-33549155)
chr6 (254-296)||(34444800-34444842)
chr6 (242-283)||(21418480-21418521)
chr6 (242-283)||(24641215-24641256)
[»] chr7 (14 HSPs)
chr7 (242-296)||(22760860-22760914)
chr7 (242-294)||(7801179-7801231)
chr7 (242-293)||(23301627-23301678)
chr7 (242-294)||(25021360-25021412)
chr7 (242-294)||(26459435-26459487)
chr7 (242-294)||(42836026-42836078)
chr7 (242-293)||(19553454-19553504)
chr7 (242-293)||(23552118-23552169)
chr7 (236-294)||(33869464-33869522)
chr7 (242-296)||(43590904-43590958)
chr7 (242-283)||(11720985-11721026)
chr7 (242-283)||(15905698-15905739)
chr7 (242-282)||(21877819-21877859)
chr7 (242-294)||(48771937-48771989)
[»] chr2 (13 HSPs)
chr2 (242-282)||(12086154-12086194)
chr2 (242-293)||(39714992-39715043)
chr2 (242-295)||(32106564-32106617)
chr2 (236-293)||(42602554-42602611)
chr2 (242-294)||(12994401-12994453)
chr2 (243-294)||(23052549-23052600)
chr2 (242-293)||(29197401-29197452)
chr2 (242-293)||(37480075-37480126)
chr2 (242-293)||(42327420-42327471)
chr2 (232-294)||(28846690-28846752)
chr2 (245-293)||(21213769-21213817)
chr2 (242-294)||(40416415-40416467)
chr2 (242-282)||(42860359-42860399)
[»] chr8 (8 HSPs)
chr8 (242-293)||(20994483-20994534)
chr8 (242-282)||(968373-968413)
chr8 (242-293)||(16852340-16852391)
chr8 (242-296)||(23361674-23361728)
chr8 (242-283)||(2203502-2203543)
chr8 (242-283)||(3624590-3624631)
chr8 (242-295)||(6530805-6530858)
chr8 (254-283)||(32157201-32157230)
[»] chr3 (12 HSPs)
chr3 (242-293)||(27923068-27923119)
chr3 (245-294)||(12761511-12761560)
chr3 (243-293)||(8051214-8051264)
chr3 (242-296)||(31510743-31510797)
chr3 (242-283)||(2667872-2667913)
chr3 (242-283)||(4844536-4844577)
chr3 (242-283)||(4870232-4870273)
chr3 (242-283)||(11612309-11612350)
chr3 (243-283)||(7673279-7673319)
chr3 (242-294)||(14186647-14186698)
chr3 (242-282)||(32651463-32651503)
chr3 (236-276)||(40130119-40130159)
[»] chr4 (7 HSPs)
chr4 (242-296)||(37109376-37109430)
chr4 (242-295)||(19238602-19238655)
chr4 (242-294)||(9241050-9241102)
chr4 (242-293)||(24827825-24827876)
chr4 (242-293)||(51250547-51250598)
chr4 (242-293)||(55427225-55427276)
chr4 (244-293)||(37720241-37720290)
[»] chr1 (8 HSPs)
chr1 (242-292)||(44126396-44126446)
chr1 (242-294)||(9165220-9165272)
chr1 (245-293)||(16170006-16170054)
chr1 (242-298)||(52116806-52116862)
chr1 (242-293)||(40257399-40257450)
chr1 (242-295)||(15581166-15581219)
chr1 (204-233)||(42983337-42983366)
chr1 (243-283)||(35699962-35700002)
[»] scaffold0258 (1 HSPs)
scaffold0258 (242-293)||(15348-15399)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 15641558 - 15642009
Alignment:
Q  1 ttcctaatgagcaattttacttttcccctctgatttagacagtttcgggtcgagcgggtgaacatgaatgagaaagatgggtcatcttcacccatttttt 100  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  15641558 ttcctaatgagcaattttacttttcccctgcgatttagacagtttcgggtcgagcgggtgaagatgaatgagaaagatgggtcatcttcacccatttttc 15641657  T
Q  101 ctctatctaaatggtgataaatcaaacccgccatgacgtgtttttattctctaagagatatgagaataatatgaatgagaggaaatannnnnnnnnnnnn 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  15641658 cactatctaaatggtgataaatcaaacccgccatgacgtgtttttattctctaagagatatgagaataatatgaatgagaggaaat-tttttttttttta 15641756  T
Q  201 ngtagaagctaaattagtccacttaaattggca-------------------tcgagaacgagcacacttccaggtcccaagtcaataccaccaggccaa 281  Q
      |||||||||||||||||||||||||||||||                   ||||| ||||||||||| ||||||||||||||||||||| | ||||||    
T  15641757 tatagaagctaaattagtccacttaaattggcaccgatgagaatcgaacaactcgaggacgagcacactcccaggtcccaagtcaataccatcgggccaa 15641856  T
Q  282 ccaaagcgggttaatgagaggaaatattgaaataggatgtcatcgaattcgagcatgtagaagatgaaggtggaagatgtatgttgtgatcatattgctc 381  Q
    |||||| || ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15641857 ccaaagtggattaatgagaggaaatattgaaataggatgtcattgatttcgggcatgtagaagatgaaggtggaagatgtatgttgtgatcatattgctc 15641956  T
Q  382 tgatgatagatgagcaaagaaagattgaaaggtgaagcgagtaagaagagaca 434  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15641957 tgatgatagatgagcaaagaaagattgaaaggtgaagcgggtaagaagagaca 15642009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 16773858 - 16773818
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaac 282  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  16773858 gagcacactcccaggtcccaagtcaataccaccagaccaac 16773818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 16457861 - 16457810
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| | |||||||||| ||||||||||||||||||| ||| |||||    
T  16457861 gagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggtt 16457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 21549162 - 21549213
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| |||||    
T  21549162 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 14495830 - 14495884
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    ||||||||| |||| |||||||||||||||||||| |||||| ||  ||||||||    
T  14495830 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggttaat 14495884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 21589338 - 21589288
Alignment:
Q  243 agcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||| ||| |||||||||||| ||||||||||||||||||| ||| |||||    
T  21589338 agcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 12234532 - 12234583
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  12234532 gagcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggtt 12234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 12188328 - 12188379
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| |||||    
T  12188328 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 12188379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 14558013 - 14557962
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||||||||||||||||||||| ||| |||||||| |||||| ||| |||||    
T  14558013 gagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 32613159 - 32613206
Alignment:
Q  236 gagaacgagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  32613159 gagaaggagcacactcccagaccccaagtcaataccaccaggccaacc 32613206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 33549155 - 33549104
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||| |||||||||||| |||||| ||| |||||    
T  33549155 gagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 34444842 - 34444800
Alignment:
Q  254 aggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||    
T  34444842 aggtcccaagtcaataccaccaggccaacccaagagggataat 34444800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 21418521 - 21418480
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| ||| |||||||| |||||||||||||||||||    
T  21418521 gagcacactcccaagtcccaagccaataccaccaggccaacc 21418480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 24641215 - 24641256
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  24641215 gagcacactcccagatcccaagtcaataccaccaagccaacc 24641256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 22760914 - 22760860
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||||    
T  22760914 gagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggttaat 22760860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 7801231 - 7801179
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||||||||||||||||||||| | ||| ||||||    
T  7801231 gagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtta 7801179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 23301627 - 23301678
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| |||||    
T  23301627 gagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 25021360 - 25021412
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||    
T  25021360 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtta 25021412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 26459435 - 26459487
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||    
T  26459435 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtta 26459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 42836026 - 42836078
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||    
T  42836026 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtta 42836078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 19553504 - 19553454
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||| ||| ||||||||||||||||||| |||||||||    
T  19553504 gagcacactcccaggtcc-aagccaataccaccaggccaacccaagcgggtt 19553454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 23552169 - 23552118
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| ||| |||||    
T  23552169 gagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggtt 23552118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 33869464 - 33869522
Alignment:
Q  236 gagaacgagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||| ||||||||||||||||| |||| |||||| || ||||||||| ||| ||||||    
T  33869464 gagaaggagcacacttccaggtctcaagccaatactactaggccaacccaagtgggtta 33869522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 43590958 - 43590904
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    ||||||||| ||| |||||||| ||||||||||||||||||| ||  ||||||||    
T  43590958 gagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttaat 43590904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 11720985 - 11721026
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  11720985 gagcacattcccaggtcccaagccaataccaccaggccaacc 11721026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 15905698 - 15905739
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||||||||||| ||||||| |||||||||||    
T  15905698 gagcacactcccaggtcccaagccaataccgccaggccaacc 15905739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 21877859 - 21877819
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaac 282  Q
    |||||| || |||||||||||||||||||||| ||||||||    
T  21877859 gagcaccctcccaggtcccaagtcaataccactaggccaac 21877819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 48771989 - 48771937
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||| ||||||| ||||||||||| ||||||| ||| ||||||    
T  48771989 gagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtta 48771937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 12086154 - 12086194
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaac 282  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  12086154 gagcacacttccaggtcccaagccaataccaccaggccaac 12086194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 39715043 - 39714992
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||| |||||    
T  39715043 gagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 32106617 - 32106564
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaa 295  Q
    ||||||||| | |||||||||||||| ||||||||||||||| ||| |||||||    
T  32106617 gagcacactccaaggtcccaagtcaacaccaccaggccaacccaagtgggttaa 32106564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 42602611 - 42602554
Alignment:
Q  236 gagaacgagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||| ||||||||| |||||||||||| ||||||||| ||||||||| ||| |||||    
T  42602611 gagaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 12994401 - 12994453
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||||||||||||| || |||||  ||||||||||    
T  12994401 gagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtta 12994453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 23052549 - 23052600
Alignment:
Q  243 agcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    |||||||| ||| |||||||| ||||||||||||||||||| ||| ||||||    
T  23052549 agcacactcccaagtcccaagccaataccaccaggccaacctaagtgggtta 23052600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 29197401 - 29197452
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| ||| |||||||||||||||||||| ||||||| ||| |||||    
T  29197401 gagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggtt 29197452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 37480126 - 37480075
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||||||||  ||||||||||| ||||||||||||||||||| ||| |||||    
T  37480126 gagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 42327420 - 42327471
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| |||||    
T  42327420 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 28846752 - 28846690
Alignment:
Q  232 catcgagaacgagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||| | ||||||||| |||||||||||||||||||||| ||  ||||| ||| ||||||    
T  28846752 catcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtta 28846690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 21213817 - 21213769
Alignment:
Q  245 cacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||||| |||||||||||| |||||||||||| |||||| | |||||||    
T  21213817 cacactcccaggtcccaagccaataccaccagaccaacccatgcgggtt 21213769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 40416415 - 40416467
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||| ||| |||||| ||||||||||||||| ||||||||| ||| ||||||    
T  40416415 gagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtta 40416467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 42860399 - 42860359
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaac 282  Q
    ||||||||| ||||||| |||||||||| ||||||||||||    
T  42860399 gagcacactcccaggtctcaagtcaatatcaccaggccaac 42860359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 20994483 - 20994534
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||||||||||||| ||||||||| ||| |||||    
T  20994483 gagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 968413 - 968373
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaac 282  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  968413 gagcacactcccaggtcccaagccaataccaccaggccaac 968373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 16852391 - 16852340
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| |||||    
T  16852391 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 23361674 - 23361728
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    ||||||||| |||  ||||||||||||||||||||| ||||| ||| ||||||||    
T  23361674 gagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggttaat 23361728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 2203543 - 2203502
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||||||||||| ||||||||| |||||||||    
T  2203543 gagcacactcccaggtcccaagccaataccactaggccaacc 2203502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 3624631 - 3624590
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||||||||||| ||||||||| |||||||||    
T  3624631 gagcacactcccaggtcccaagccaataccactaggccaacc 3624590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 6530858 - 6530805
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaa 295  Q
    ||||||||| | |||||||||| ||| ||||||||||||||| ||| |||||||    
T  6530858 gagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggttaa 6530805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 283
Target Start/End: Complemental strand, 32157230 - 32157201
Alignment:
Q  254 aggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||||||||||||||||||||||||    
T  32157230 aggtcccaagtcaataccaccaggccaacc 32157201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 27923068 - 27923119
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||    
T  27923068 gagcacacttccatgtcccaagccaataccaccaggccaacctaagtgggtt 27923119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 12761560 - 12761511
Alignment:
Q  245 cacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||||||||    
T  12761560 cacactcccaggtcccaagtcaataccaccagaccaacccatgcgggtta 12761511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 8051264 - 8051214
Alignment:
Q  243 agcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||| ||| |||||||||||| ||||||||||||||||||| ||| |||||    
T  8051264 agcatactgccaggtcccaagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 31510743 - 31510797
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    ||||| ||| ||| ||||||||||||||||||||| |||||| ||| ||||||||    
T  31510743 gagcatactcccaagtcccaagtcaataccaccagaccaacctaagtgggttaat 31510797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 2667913 - 2667872
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||| ||||||| |||||||||||||||||||    
T  2667913 gagcacactcccagatcccaagccaataccaccaggccaacc 2667872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 4844536 - 4844577
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||| |||||||||||||||||||| ||||||    
T  4844536 gagcacactcccagatcccaagtcaataccaccagaccaacc 4844577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 4870232 - 4870273
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||| |||||||||||||||||||| ||||||    
T  4870232 gagcacactcccagatcccaagtcaataccaccagaccaacc 4870273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 11612350 - 11612309
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||| |||| |||||||| ||||||||||||||||||    
T  11612350 gagcacactcccagctcccaagtgaataccaccaggccaacc 11612309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 7673319 - 7673279
Alignment:
Q  243 agcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||||||  |||||||||||||||||||| ||||||    
T  7673319 agcacacttccaaatcccaagtcaataccaccagaccaacc 7673279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 14186698 - 14186647
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||    
T  14186698 gagcacact-ccaggtcccaagacaataccactaggccaacccaagtgggtta 14186647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 32651463 - 32651503
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaac 282  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  32651463 gagcacactcccaggtcccaagccaataccactaggccaac 32651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 40130119 - 40130159
Alignment:
Q  236 gagaacgagcacacttccaggtcccaagtcaataccaccag 276  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  40130119 gagaaggagcacactaccagatcccaagtcaataccaccag 40130159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 37109376 - 37109430
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaat 296  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||||    
T  37109376 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttaat 37109430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 19238602 - 19238655
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaa 295  Q
    ||||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||    
T  19238602 gagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggttaa 19238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 9241050 - 9241102
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| ||| ||||||    
T  9241050 gagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtta 9241102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 24827876 - 24827825
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||| |||||    
T  24827876 gagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggtt 24827825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 51250547 - 51250598
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| ||| |||||    
T  51250547 gagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 55427225 - 55427276
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||| ||| |||||||||||| ||||||||||||||||||| ||| |||||    
T  55427225 gagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 37720241 - 37720290
Alignment:
Q  244 gcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||| |||||||||||| ||||| ||||||||||||| ||| |||||    
T  37720241 gcacactcccaggtcccaagccaataacaccaggccaacccaagtgggtt 37720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 44126446 - 44126396
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggt 292  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||| ||||    
T  44126446 gagcacactcccaggtcccaggtcaataccaccaggccaacccaagtgggt 44126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 9165220 - 9165272
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtta 294  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||    
T  9165220 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtta 9165272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 16170006 - 16170054
Alignment:
Q  245 cacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    |||||| ||||||||||||||||||||||||||| |||| ||| |||||    
T  16170006 cacactcccaggtcccaagtcaataccaccaggctaacccaagtgggtt 16170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 52116806 - 52116862
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaatga 298  Q
    ||||||||| ||| |||||||| ||||||||||||||||||| ||  ||||||||||    
T  52116806 gagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttaatga 52116862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 40257450 - 40257399
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| ||||||| |||| ||||||||||||||||||| ||| |||||    
T  40257450 gagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 15581166 - 15581219
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggttaa 295  Q
    ||||||||| | |||||||||| ||| ||||||||||||||| ||| |||||||    
T  15581166 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttaa 15581219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 42983337 - 42983366
Alignment:
Q  204 agaagctaaattagtccacttaaattggca 233  Q
    ||||||||||||||||||||||||||||||    
T  42983337 agaagctaaattagtccacttaaattggca 42983366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 35700002 - 35699962
Alignment:
Q  243 agcacacttccaggtcccaagtcaataccaccaggccaacc 283  Q
    ||||||||||||| | ||||||||||||||| |||||||||    
T  35700002 agcacacttccagtttccaagtcaataccactaggccaacc 35699962  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 15348 - 15399
Alignment:
Q  242 gagcacacttccaggtcccaagtcaataccaccaggccaaccaaagcgggtt 293  Q
    ||||||||| |||||||||||| |||||||||||| |||||| ||| |||||    
T  15348 gagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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