View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_13 (Length: 401)
Name: NF13823_low_13
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 78 - 401
Target Start/End: Original strand, 41076829 - 41077152
Alignment:
| Q |
78 |
gtaatctaacgagacattctcttgggttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgcaaagacaacacttt |
177 |
Q |
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| T |
41076829 |
gtaatctaacgagacattctcttgggttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgcaaagacaacacttt |
41076928 |
T |
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| Q |
178 |
gaattgatccaccatctcatcaatctccaccaccttattattgaatatcctatcattcctcatcttccaaaccacccaaatagttgcatgtcaaatgatc |
277 |
Q |
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| T |
41076929 |
gaattgatccaccatctcatcaatctccaccacattattattgaatatcctatcattcctcatctttcaaaccacccaaatagttgcatgccaaatgatc |
41077028 |
T |
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| Q |
278 |
cacgcaccatgtctaaggtttttaccgcgcactgcatatgtccaaccatttaaatggataaataaatttggtggagtgagcatagagacctcaaaccacc |
377 |
Q |
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| T |
41077029 |
catgcaccacgtctaaggtttttaccgcgcactgcatttgtccaaccatttaaatggataaataaatttggtggagtaagcatagagacctcaaaccacc |
41077128 |
T |
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| Q |
378 |
tcatcacccttaaccacaccttac |
401 |
Q |
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| T |
41077129 |
tcatcacccttaaccacaccttac |
41077152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 15623368 - 15623306
Alignment:
| Q |
101 |
gggttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgc |
163 |
Q |
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| T |
15623368 |
gggttccaacaccactcataaaacagacacgtgggaattttcaacctacacatactccattgc |
15623306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 15647157 - 15647095
Alignment:
| Q |
101 |
gggttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgc |
163 |
Q |
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| T |
15647157 |
gggttccaacaccactcataaaacagacacgtgggaattttcaacctacacatactccattgc |
15647095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 8216043 - 8216113
Alignment:
| Q |
104 |
ttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgcaaagacaacac |
174 |
Q |
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| T |
8216043 |
ttccaacaccattcataaaacaaacaagttggattcttcaacctattcaaactccattggcaagacaacac |
8216113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 25355738 - 25355654
Alignment:
| Q |
95 |
tctcttgggttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgcaaagacaacactttga |
179 |
Q |
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| T |
25355738 |
tctctaggattccaacaccattcatagtacaaacaagttgaaattttcaacctattcaaactccattgttaagaaaacaccttga |
25355654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 16256910 - 16256764
Alignment:
| Q |
102 |
ggttccaacaccattcataaaatagactagttggaattttcaacctattcatactccattgcaaagacaacactttgaattgatccaccatctcatcaat |
201 |
Q |
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||||||||||||| | |||||| | || ||||| |||||||| ||||||||| ||| ||| |||| | ||| |||| |||||||||||| ||||||| |
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| T |
16256910 |
ggttccaacaccacttataaaacaaacaagttgcaattttcattctattcatataccaatgctaagagatcaccttgacttgatccaccatttcatcaa- |
16256812 |
T |
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| Q |
202 |
ctccac-caccttattattgaatatcctatcattcctcatcttccaaa |
248 |
Q |
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| T |
16256811 |
ccccacaaactttgttattaaaaaccctatcatttctcatcttccaaa |
16256764 |
T |
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