View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_18 (Length: 359)
Name: NF13823_low_18
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 2473561 - 2473884
Alignment:
| Q |
1 |
gcaagacattccatataaagctttgaggatccccatgagttatgacatagcttggaaacacattgcactccaatatatggtgcctgcaaccttgtacccc |
100 |
Q |
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| T |
2473561 |
gcaagacattccatataaagctttgaggatccccatgagttatgacattgcttggacacacattgcagtccaatatatggtgcctgcaaccttgtacccc |
2473660 |
T |
|
| Q |
101 |
tttctttaaccaccatcatcagtaatgtgatagactccattttgcaactaaattttttag--------aaatctaaaatattgtgaatgtcaccacagtc |
192 |
Q |
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| T |
2473661 |
tttctttaaccaacatca---gtaatgtgatagcctccattttgcaactaaattttttagccaagttaaaatctaaaatattgtgaatgtcaccacagtc |
2473757 |
T |
|
| Q |
193 |
aaccaactcattcccatatagtgcttttactatctcagttactgagacttcttcctcataatcaacaaaaatacaactaagattaaaacacttagtgtca |
292 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
2473758 |
aactaactcattcccatatagtgcttttacaatctcagttactgaaacttcttcctcataatcaacaaaaatacaactaagattaaaacagttggtgtca |
2473857 |
T |
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| Q |
293 |
agagagtaaaccacataaatcctaacc |
319 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2473858 |
agagagtaaaccacataaatcctaacc |
2473884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 39625574 - 39625501
Alignment:
| Q |
246 |
cctcataatcaacaaaaatacaactaagattaaaacacttagtgtcaagagagtaaaccacataaatcctaacc |
319 |
Q |
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|||||||| |||||| || | ||||| |||||||| |||| || ||||||| | ||||||||||||||||||| |
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| T |
39625574 |
cctcataagcaacaagaagaaaactatgattaaaagacttgatggcaagagaattaaccacataaatcctaacc |
39625501 |
T |
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