View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_19 (Length: 349)
Name: NF13823_low_19
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_19 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 40635773 - 40635439
Alignment:
| Q |
15 |
cagagacactaacatccaagtttaaattcattattttctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635773 |
cagagacactaacatccaagtttaaattcattattttctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatc |
40635674 |
T |
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| Q |
115 |
ataccaatgcaaaacaccccacctcctcctcttgactgattttatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635673 |
ataccaatgcaaaacaccccacctcctcctcttgactgatttgatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctcc |
40635574 |
T |
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| Q |
215 |
gcccattctttcaactcttgttcctgttctccatccccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccactcta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40635573 |
gcccattctttcaactcttgttcctgttctccatccccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccattcta |
40635474 |
T |
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| Q |
315 |
cgtgcctcgctgtagcccccaaaactgcatactct |
349 |
Q |
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| T |
40635473 |
cgtgcctcgctgtagcccccaaaactgcatactct |
40635439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 40629364 - 40629696
Alignment:
| Q |
17 |
gagacactaacatccaagtttaaattcattattttctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatcat |
116 |
Q |
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|||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
40629364 |
gagatactaacatccaaatttaagttcattattttctgagagatatctctcatcctctttcggatcttctccagctcttttccaaccttgtatttgtcat |
40629463 |
T |
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| Q |
117 |
accaatgcaaaacaccccacctcctcctcttgactgattttatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctccgc |
216 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| | ||||||||| | ||||||||| ||||||||||| || |
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| T |
40629464 |
accaatgcaaaactccccacctcctcctcttcactgattttatcacaaacgtatctatcacgtcctttgcatccaaagcaacatctttcaacttctctgc |
40629563 |
T |
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| Q |
217 |
ccattctttcaactcttgttcctgttctccatccccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccactctacg |
316 |
Q |
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||||||| |||| ||||||||||||| || |||||||| || |||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
40629564 |
ccattctcgcaacgcttgttcctgttcgccttccccgcgttgttcaatctgctctaacaatcccatcattgacctcagctctttctcaatccattctacg |
40629663 |
T |
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| Q |
317 |
tgcctcgctgtagcccccaaaactgcatactct |
349 |
Q |
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|| ||||||| | ||||||| || ||||||||| |
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| T |
40629664 |
tgtctcgctgcatcccccaacaccgcatactct |
40629696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 51 - 321
Target Start/End: Complemental strand, 40656319 - 40656049
Alignment:
| Q |
51 |
tctgagagatgtctctcatcctctttcggatctcctccagctcttttccaactttgtatttatcataccaatgcaaaacaccccacctcctcctcttgac |
150 |
Q |
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||||||||||||||||||||||| | ||||||| || || |||||| ||||| |||| ||| ||| ||||| || ||| ||||| |||||||| || || |
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| T |
40656319 |
tctgagagatgtctctcatcctcctgcggatcttctgcaactctttcccaaccttgtgtttgtcaatccaatacagaactccccatctcctccttttcac |
40656220 |
T |
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| Q |
151 |
tgattttatgacgaacgtttctatcacattctttgcatctagagcaacatccttcaacttctccgcccattctttcaactcttgttcctgttctccatcc |
250 |
Q |
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| T |
40656219 |
cgatttgatcacaaacgtttctatcacatcctctgcatcaccagcaacttccttcaacttctcttcccactcattaaactcttgttcttgttctccgtac |
40656120 |
T |
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| Q |
251 |
ccgcgctgctcaacctgttctaacaatccccgcattgacctcagctctttctcaatccactctacgtgcct |
321 |
Q |
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| T |
40656119 |
gcacgctgcccggcctgttccaacaatccctgcattgacctcagctctctttcaatccattctacgtgcct |
40656049 |
T |
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