View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_21 (Length: 326)
Name: NF13823_low_21
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 39 - 314
Target Start/End: Original strand, 33453587 - 33453862
Alignment:
| Q |
39 |
taaataattcatactgcacatgttgcccatcaagaaaagcttactaacatgcatagtgctattagtcaggtgataaattcattaaagaaacttttaattc |
138 |
Q |
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| T |
33453587 |
taaataattcatactgcacatgttgcccatcaagaaaagcttactaacatgcatagtactattagtcaggtaataaattcattaaagaaacttttaattc |
33453686 |
T |
|
| Q |
139 |
agttttcatatagaaaaaagtttggtagaattggtcacatgttattattccttaactgcacaatatcaattattagaaattatattgagcaatagtgtca |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33453687 |
agttttcatatagaaaaaagtttggtagaattggtcacatgttattattccttaactgcacaatatcaattattagaaattatattgagcaatagtatca |
33453786 |
T |
|
| Q |
239 |
gtcaatatttattgttatattcatcaagttttcatactttctgccacttttgcatctcttttacaaaagcctccta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33453787 |
gtcaatatttattgttatattcatcaagttttcatactttctgccacttttgcatctcttttacaaaagcctccta |
33453862 |
T |
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