View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_22 (Length: 322)
Name: NF13823_low_22
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 23231333 - 23231568
Alignment:
| Q |
35 |
ttagttattgttgttattattattgaaaatattggtttaagtgtatttttgtgtgtatttctaaaaatgagttggatttgtagttgtgaccatataaaaa |
134 |
Q |
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| T |
23231333 |
ttagttattgttgttattattattgaaaatattggtttaagtgtatttttgtgtgtatttctaaaaatgagttggatttgtagttgtgaccatataaaaa |
23231432 |
T |
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| Q |
135 |
cataataaacatgatgagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacatta |
234 |
Q |
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| T |
23231433 |
cataataaacatgaggagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacatta |
23231532 |
T |
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| Q |
235 |
agcaaaatgtcaagaaaatctttgagtctctcttct |
270 |
Q |
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| T |
23231533 |
agcaaaatgtcaagaaaatctttcagtctctcttct |
23231568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 48602564 - 48602459
Alignment:
| Q |
165 |
taccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttgagtctc |
264 |
Q |
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| T |
48602564 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
48602465 |
T |
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| Q |
265 |
tcttct |
270 |
Q |
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|||||| |
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| T |
48602464 |
tcttct |
48602459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 48592889 - 48592764
Alignment:
| Q |
145 |
atgatgagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgt |
244 |
Q |
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| T |
48592889 |
atgaggagaagttatatacgtaccaatattaatgatttgatatgatttctagtaaagttgacttcacagtttttctcactgtagacatctagcaaaatgt |
48592790 |
T |
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| Q |
245 |
caagaaaatctttgagtctctcttct |
270 |
Q |
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| T |
48592789 |
caagaaaatctttcagtctctcttct |
48592764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 39413453 - 39413498
Alignment:
| Q |
45 |
ttgttattattattgaaaatattggtttaagtgtatttttgtgtgt |
90 |
Q |
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| T |
39413453 |
ttgttattattattgaaaacattggttaatgtgtattgttgtgtgt |
39413498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 29139494 - 29139539
Alignment:
| Q |
45 |
ttgttattattattgaaaatattggtttaagtgtatttttgtgtgt |
90 |
Q |
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| T |
29139494 |
ttgttattattattgaaaatattagttaatgtgtattgttgtgtgt |
29139539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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