View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_24 (Length: 300)
Name: NF13823_low_24
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 2680375 - 2680109
Alignment:
| Q |
19 |
aaatattgcaaacattttagccacatccaagattttttcatcttctaagcccaaatgtgaggcctcaacaagctctataaaatatttagcatcactagag |
118 |
Q |
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| T |
2680375 |
aaatattgcaaacattttggccacatccaagattttttcatcttctaagcccaaatgtgaggcctcaacaagctctataaaatatttagcatcactagag |
2680276 |
T |
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| Q |
119 |
aatctgttgtctgtaacatctaagaagttgcttagtatatctgaatttcatgaatgacaaccaaaaattagttcctaggttgtgataaatttgatgaata |
218 |
Q |
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| T |
2680275 |
aatctgttgtctataacatctaagaagttgcttagtatatctgaatttcatgaatgacaacgaaaaattagttcctaggttgtgataaatttgatgaata |
2680176 |
T |
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| Q |
219 |
tctaattaaaatagatagttaccagatggaaaaacattgtatccatgtgtgccttgaaagcctgaag |
285 |
Q |
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| T |
2680175 |
tctaattaaaatagatagttaccagatggaaaaacattgtatccatgtgtgccttaaaagcctgaag |
2680109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 2685629 - 2685357
Alignment:
| Q |
24 |
ttgcaaacattttagccacatccaagattttttcatcttctaagcccaaatgtgaggcctcaacaagctctataaaatatttagcatcactagagaatct |
123 |
Q |
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| T |
2685629 |
ttgcaaatattttggcatcatccaagattatttcatcttctaaacccaaatgtgaggcctcaagaagctctataatatctttagcattactagagaattt |
2685530 |
T |
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| Q |
124 |
gttgtctgtaacatctaagaagttgcttagtatatctgaatttcatgaat------------gacaaccaaaaattagttcctaggttgtgataaatttg |
211 |
Q |
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| T |
2685529 |
attgtccatcacatctaagaagttgcttagtatatctgaatttcatgaataaataacaaccaaaaaaccaaaaattagttcctaggttttgataaatttg |
2685430 |
T |
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| Q |
212 |
atgaatatctaattaaaatagatagttaccagatggaaaaacattgtatccatgtgtgccttgaaagcctgaag |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
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| T |
2685429 |
atgaatatctaattaaaatagatagttaccagatggaaaaacattgtatccatgt-tgccttaaaagcttgaag |
2685357 |
T |
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