View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_3 (Length: 541)
Name: NF13823_low_3
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 41638808 - 41638283
Alignment:
| Q |
1 |
ttctggaaggatagataactgggctgacactgatatgctcgttattgactatacggttagtcagattcagcattttgaagcaacaaaagtggttgccgat |
100 |
Q |
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| T |
41638808 |
ttctggaaggatagataactgggctgacactgatatgcccgttattgactatacggttagtcagattcagcattttgaagcaacaaaagtggttgccgat |
41638709 |
T |
|
| Q |
101 |
tatgttgacagtttgaggaagatgggacctgagtaatttgataaatacacttccctcaaatataattgatgacatcaagaggttgtctccccctgatcct |
200 |
Q |
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| T |
41638708 |
tatgttgacagtttgaggaagatgggacctgagtaatttgataaatacacttccctcaaatataattgatgacatcaagaggttgtctccccctgatcct |
41638609 |
T |
|
| Q |
201 |
caaagtagtgatgactgtgtttcatggaggcttgcaagtgatggtgaattcacattggcatcagcttacaaggccgtagcgatatcaaacaatagcaacg |
300 |
Q |
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| T |
41638608 |
caaagtagtgatgactgtgtttcatggaggcttgcaagtgatggtgaattcacattggcatcagcttacaaggccgtagcgatatcaaacaatagcaacg |
41638509 |
T |
|
| Q |
301 |
cgcgtcagatttttagagcaatctggagttggagaggaccacatagaattcattgtttctcctattctgaatcaagctgatcaatacaaatctgatgtag |
400 |
Q |
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| T |
41638508 |
cgcgtcagatttttagagcaatctggagttggagaggaccacatagaattcattgtttctcctattctgaatcaagctgatcaatacaaatctgatgtag |
41638409 |
T |
|
| Q |
401 |
taattagatggcagcctccacatgacagtttcatagctcttaacattgatggttccgtggttgaacacggaagaaaagcagcgtgtggaggggttatgca |
500 |
Q |
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| T |
41638408 |
taattagatggcagcctccacatgacagtttcatagctcttaacattgatggttccgtggttgaacacggaagaaaagcagcgtgtggaggggttatgct |
41638309 |
T |
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| Q |
501 |
aatggaaaatttcttgttgcttatgt |
526 |
Q |
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| T |
41638308 |
aatggaaaatttcttgttgcttatgt |
41638283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 2719080 - 2719403
Alignment:
| Q |
14 |
gataactgggctgacactgatatgc-tcgttattgactatacggttagtcagattcagcattttgaagcaacaaaagtggttgccgattatgttgacagt |
112 |
Q |
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||||||||||||||||||||||||| |||| || ||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2719080 |
gataactgggctgacactgatatgcctcgt-ataaactatacggttagtctgactgagcattttgaagcaacaaaagtggttgaaaattatgttgacagt |
2719178 |
T |
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| Q |
113 |
ttgaggaagatgggacctgagtaatttgataaatacacttccctcaaatataattgatgacatcaagaggttgtctccccctgatcctcaaagtagtgat |
212 |
Q |
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|| ||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||| |
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| T |
2719179 |
ga-agaaagatgggaccagagtagtttgataaataca--------------------tgacatcaagaggttgcctccacctcatcctcaaagtggtgat |
2719257 |
T |
|
| Q |
213 |
gactgtgtttcatggaggcttgcaagtgatggtgaattcacattggcatcagcttacaaggccgtagcgatatcaaacaatagcaacgcgcgtcagattt |
312 |
Q |
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|||||| || | ||||||||| ||||||||||| |||||| ||| ||||||| | || | | || || ||| |||||||||||||||| |||||||| |
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| T |
2719258 |
gactgtcttgcttggaggcttacaagtgatggttgattcacgctggtatcagctaatgagactgcagtgagatcgaacaatagcaacgcgcatcagattt |
2719357 |
T |
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| Q |
313 |
ttagagcaatctggagttggagaggaccacatagaattcattgttt |
358 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
2719358 |
ttagagcaatttggagttggagaggaccacatagaattcaatgttt |
2719403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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