View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13823_low_31 (Length: 268)

Name: NF13823_low_31
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13823_low_31
NF13823_low_31
[»] chr6 (6 HSPs)
chr6 (11-252)||(33468381-33468623)
chr6 (194-249)||(19040354-19040409)
chr6 (194-244)||(13851738-13851788)
chr6 (194-244)||(30866151-30866201)
chr6 (203-244)||(26314641-26314682)
chr6 (203-243)||(15443706-15443746)
[»] chr5 (8 HSPs)
chr5 (201-245)||(35904654-35904698)
chr5 (194-251)||(43208274-43208331)
chr5 (194-249)||(30502390-30502445)
chr5 (194-249)||(30542733-30542788)
chr5 (198-236)||(8420033-8420071)
chr5 (199-244)||(30136681-30136726)
chr5 (194-239)||(38749575-38749620)
chr5 (195-243)||(17593730-17593778)
[»] chr3 (4 HSPs)
chr3 (204-249)||(39002044-39002089)
chr3 (194-249)||(7928452-7928507)
chr3 (203-251)||(24633401-24633449)
chr3 (200-244)||(27097066-27097110)
[»] chr7 (2 HSPs)
chr7 (198-238)||(13427322-13427362)
chr7 (194-249)||(42720892-42720947)
[»] chr8 (1 HSPs)
chr8 (194-239)||(4611536-4611581)
[»] chr2 (1 HSPs)
chr2 (194-239)||(28677911-28677956)
[»] chr1 (3 HSPs)
chr1 (194-239)||(6427352-6427397)
chr1 (198-251)||(30847720-30847773)
chr1 (194-238)||(398778-398822)
[»] chr4 (2 HSPs)
chr4 (194-246)||(3712514-3712566)
chr4 (194-249)||(35723386-35723442)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 33468623 - 33468381
Alignment:
Q  11 cataggactggttagtagttgtttttatgattcatgcacttcacatatgttgacannnnnnnnnnnatattatatacattatccttgcatacgcgtctgt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||           |||||||||||| |||||||||||| ||||||||    
T  33468623 cataggactggttagtagttgtttttatgattcatgcacttcacatatattgacatttttttttttatattatatacactatccttgcatatgcgtctgt 33468524  T
Q  111 ctgcnnnnnnn-atgtcgtggtcaaactcttttgcctgttctcaactaaaccatgaagcaatcgggcacggacactgacgtgaccaccgctagtaatttg 209  Q
    ||||        ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  |||||||| |||||||    
T  33468523 ctgcttttttttatgtcgtggtcaaactcttttgcctgttctcaactaaactatgaagcaatcgggcacggacactgacgcgcacaccgctaataatttg 33468424  T
Q  210 aaaaaataacttaattcaatgtaattatatatgtctgtgttgc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33468423 aaaaaataacttaattcaatgtaattatatatgtctgtgttgc 33468381  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 19040354 - 19040409
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgt 249  Q
    |||||||| |||||||| ||||| || ||||||| ||||||||||| |||||||||    
T  19040354 caccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgt 19040409  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 13851738 - 13851788
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 244  Q
    |||||||| |||||||| |||||||| ||||||| ||||||||||| ||||    
T  13851738 caccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgtc 13851788  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 30866201 - 30866151
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 244  Q
    |||||||| |||||||| ||||| || ||||||||||||||||||| ||||    
T  30866201 caccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 26314682 - 26314641
Alignment:
Q  203 taatttgaaaaaataacttaattcaatgtaattatatatgtc 244  Q
    |||||||||||||| |  ||||||||||||||||||||||||    
T  26314682 taatttgaaaaaatcatataattcaatgtaattatatatgtc 26314641  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 15443706 - 15443746
Alignment:
Q  203 taatttgaaaaaataacttaattcaatgtaattatatatgt 243  Q
    |||||||| |||||||| ||||||||| |||||||||||||    
T  15443706 taatttgagaaaataacataattcaatataattatatatgt 15443746  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 35904654 - 35904698
Alignment:
Q  201 agtaatttgaaaaaataacttaattcaatgtaattatatatgtct 245  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  35904654 agtaatttgaaaaaataacttaattcagtgtaattatatgtgtct 35904698  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 43208331 - 43208274
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgttg 251  Q
    ||||| ||||||||||| ||||| || |||||||||||||| |||| |||||||||||    
T  43208331 caccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttg 43208274  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 30502445 - 30502390
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgt 249  Q
    |||||||| |||||||| ||||| |||||||||| ||||||||||| |||| ||||    
T  30502445 caccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgt 30502390  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 30542788 - 30542733
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgt 249  Q
    |||||||| |||||||| ||||| |||||||||| ||||||||||| |||| ||||    
T  30542788 caccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgt 30542733  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 8420033 - 8420071
Alignment:
Q  198 gctagtaatttgaaaaaataacttaattcaatgtaatta 236  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  8420033 gctaataatttgaaaaaataacataattcaatgtaatta 8420071  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 30136726 - 30136681
Alignment:
Q  199 ctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 244  Q
    |||||||||| ||||||| || |||||||||||||||||| |||||    
T  30136726 ctagtaattttaaaaaattacgtaattcaatgtaattataaatgtc 30136681  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 38749620 - 38749575
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 239  Q
    ||||| || |||||||||||||| || |||||||||||||||||||    
T  38749620 caccgataataatttgaaaaaatgacataattcaatgtaattatat 38749575  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 17593778 - 17593730
Alignment:
Q  195 accgctagtaatttgaaaaaataacttaattcaatgtaattatatatgt 243  Q
    ||||||| |||||||| ||||| || ||||||| |||||||||||||||    
T  17593778 accgctaataatttgagaaaatcacgtaattcagtgtaattatatatgt 17593730  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 39002044 - 39002089
Alignment:
Q  204 aatttgaaaaaataacttaattcaatgtaattatatatgtctgtgt 249  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||    
T  39002044 aatttgaaaaaatcacataattcaatgtaattatatatgtcagtgt 39002089  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 7928452 - 7928507
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgt 249  Q
    |||||||| |||||||||||||| || ||||||| ||||||||||| |||| ||||    
T  7928452 caccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgt 7928507  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 24633449 - 24633401
Alignment:
Q  203 taatttgaaaaaataacttaattcaatgtaattatatatgtctgtgttg 251  Q
    ||||||| |||||| || ||||||||||||||||||| |||| ||||||    
T  24633449 taatttggaaaaatcacgtaattcaatgtaattatatgtgtcggtgttg 24633401  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 27097110 - 27097066
Alignment:
Q  200 tagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 244  Q
    ||||||||||| ||||| || ||||||||| ||||||||||||||    
T  27097110 tagtaatttgagaaaattacataattcaatttaattatatatgtc 27097066  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 13427322 - 13427362
Alignment:
Q  198 gctagtaatttgaaaaaataacttaattcaatgtaattata 238  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  13427322 gctagtaatttgaaaaaatcacttaattcaatataattata 13427362  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 42720947 - 42720892
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgt 249  Q
    |||||||| |||||||||||||| || ||||| ||||||||||||| |||| ||||    
T  42720947 caccgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgt 42720892  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 4611536 - 4611581
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 239  Q
    |||||||| |||||||| |||||||| ||||||| |||||||||||    
T  4611536 caccgctaataatttgagaaaataacataattcagtgtaattatat 4611581  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 28677911 - 28677956
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 239  Q
    |||||||| |||||||||||||| || ||||||| |||||||||||    
T  28677911 caccgctaataatttgaaaaaatcacataattcagtgtaattatat 28677956  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 6427352 - 6427397
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 239  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||    
T  6427352 caccgctaataatttgagaaaatcacataattcaatgtaattatat 6427397  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 30847773 - 30847720
Alignment:
Q  198 gctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgttg 251  Q
    |||| |||||||||||||| || |||||||||||||| |||| |||| ||||||    
T  30847773 gctaataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttg 30847720  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 398822 - 398778
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattata 238  Q
    |||||||| |||||||||||||| || ||||||| ||||||||||    
T  398822 caccgctaataatttgaaaaaatcacataattcagtgtaattata 398778  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 3712566 - 3712514
Alignment:
Q  194 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctg 246  Q
    |||||||| |||||||| ||||| |  ||||||||||||||||||| ||||||    
T  3712566 caccgctaataatttgagaaaatcatgtaattcaatgtaattatatgtgtctg 3712514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 35723442 - 35723386
Alignment:
Q  194 caccgctagtaatttgaaaaaata-acttaattcaatgtaattatatatgtctgtgt 249  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||| |||| ||||    
T  35723442 caccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgt 35723386  T

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