View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_34 (Length: 239)
Name: NF13823_low_34
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35921856 - 35921636
Alignment:
| Q |
1 |
aaaaaattaactcacatacgcactcactgttttgtaaacttttacgagtttaagtaaaataataaaattggaaactctcacttttactagtcgagtctac |
100 |
Q |
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| T |
35921856 |
aaaaaattaactcgcatacgcactcactgttttgtaaacttttacgagtttaagtaaaataataaaattggaaactctgacttttactagtcgagtctac |
35921757 |
T |
|
| Q |
101 |
agaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgttcctcactgggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921756 |
agaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgttcctcactgggat |
35921657 |
T |
|
| Q |
201 |
atggagcctttgaggagctcg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35921656 |
atggagcctttgaggagctcg |
35921636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 35915414 - 35915265
Alignment:
| Q |
72 |
aaactctcacttttactagtcgagtctacagaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaact |
171 |
Q |
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||||||||| ||||||||||| |||| |||||||||||||||||||| || | ||||| |||||| |||||| ||||||||| |||||||||||||||| |
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| T |
35915414 |
aaactctcagttttactagtcaagtcaacagaagctcaacaagtttatttcgcctctcgagtttgaaagcttcgattttgacaacataatgtttgaaact |
35915315 |
T |
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| Q |
172 |
cacaggacctggttgttcctcactgggatatggagcctttgaggagctcg |
221 |
Q |
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| T |
35915314 |
cgcaggacctggttgttcctcactgggatatggagcctttcaagagctcg |
35915265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 35910984 - 35910840
Alignment:
| Q |
75 |
ctctcacttttactagtcgag--tctacagaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaactc |
172 |
Q |
| |
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|||||| |||||||||||||| |||| ||||||||||||||||||||| || | | || |||||| ||| ||||| ||||||||||||||||| |
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| T |
35910984 |
ctctcagttttactagtcgagagtctatgtaagctcaacaagtttacttag--tcgagattatgacagctttgattctgacaacataatgtttgaaactc |
35910887 |
T |
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| Q |
173 |
acaggacctggttgttcctcactgggatatggagcctttgaggagct |
219 |
Q |
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||||||||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
35910886 |
acaggacctggctgttcctcactggggtatggagcctttcaggagct |
35910840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 35940743 - 35940615
Alignment:
| Q |
93 |
gagtctacagaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgttcctc |
192 |
Q |
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|||||||||||||||||| |||||||| ||| ||||||||||| || ||| ||| |||| ||||||||||||| | |||||||||||| ||||| || |
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| T |
35940743 |
gagtctacagaagctcaaaaagtttacctagcctctcaagtttaacaaattcgattacgacaacataatgtttgaaccacacaggacctggctgttcttc |
35940644 |
T |
|
| Q |
193 |
actgggatatggagcctttgaggagctcg |
221 |
Q |
| |
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||| || |||||||||||| ||||||||| |
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| T |
35940643 |
acttgggtatggagcctttcaggagctcg |
35940615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 35928327 - 35928232
Alignment:
| Q |
124 |
actctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgttcctcactgggatatggagcctttgaggagct |
219 |
Q |
| |
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|||||| |||||| |||||| ||| ||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
35928327 |
actctcgagtttgacagctttgattctgacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcaggagct |
35928232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 35935178 - 35935048
Alignment:
| Q |
89 |
agtcgagtctacagaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgtt |
188 |
Q |
| |
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||||||||||||||||||| ||| |||||| |||||||| |||||| | || || ||| | |||||| |||||||| |||||||||||| |||| |
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| T |
35935178 |
agtcgagtctacagaagctacacatgtttacctagactctagagtttgaaaaatttgatgctgataacataatatttgaaacacacaggacctggctgtt |
35935079 |
T |
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| Q |
189 |
cctcactgggatatggagcctttgaggagct |
219 |
Q |
| |
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| ||||| || |||||||||||||||||||| |
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| T |
35935078 |
cttcacttgggtatggagcctttgaggagct |
35935048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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