View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13823_low_39 (Length: 223)

Name: NF13823_low_39
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13823_low_39
NF13823_low_39
[»] chr2 (7 HSPs)
chr2 (1-223)||(11156664-11156886)
chr2 (20-223)||(11149996-11150199)
chr2 (26-223)||(11146027-11146224)
chr2 (40-206)||(11137739-11137905)
chr2 (45-146)||(10793204-10793305)
chr2 (45-223)||(11119183-11119361)
chr2 (45-121)||(11111514-11111590)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11156886 - 11156664
Alignment:
Q  1 actatggaggctatagtggctaaatctagttctgcagaatttgagttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156886 actatggaggctatagtggctaaatctagttctgcagaatttgagttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaa 11156787  T
Q  101 tattgcccattttaatcattgcagccttaaagctctcaaagaaagcgttttgatcggtgctgaatttgttgacaatgctaatcgtatctgccccggatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11156786 tattgcccattttaatcattgcagccttaaagctctcaaagaaagcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgt 11156687  T
Q  201 tgagaacaactctttatcacttt 223  Q
    |||||||||||||| ||||||||    
T  11156686 tgagaacaactcttgatcacttt 11156664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11150199 - 11149996
Alignment:
Q  20 ctaaatctagttctgcagaatttgagttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcat 119  Q
    ||||| |||||||| | || ||||| ||||||||||||||||||||||||||||||||||   |||| |||| |||||||||||| |||||||| |||||    
T  11150199 ctaaacctagttctactgattttgaattaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcat 11150100  T
Q  120 tgcagccttaaagctctcaaagaaagcgttttgatcggtgctgaatttgttgacaatgctaatcgtatctgccccggatgttgagaacaactctttatca 219  Q
     |||||||||||||||||||| ||||| |||||||||||    |||||||||||||||||||| |||||||  || ||||||||||||||||||| ||||    
T  11150099 agcagccttaaagctctcaaaaaaagctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatca 11150000  T
Q  220 cttt 223  Q
    ||||    
T  11149999 cttt 11149996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 11146224 - 11146027
Alignment:
Q  26 ctagttctgcagaatttgagttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagc 125  Q
    |||||||| | || ||||| ||||||||||||||||||||||||||||||||||   |||| |||| |||||||||||| |||||||||||||| |||||    
T  11146224 ctagttctactgattttgaattaacaaagttgcattgttttctaatctctccttggttcccggttaacacaccaatatttcccattttaatcatagcagc 11146125  T
Q  126 cttaaagctctcaaagaaagcgttttgatcggtgctgaatttgttgacaatgctaatcgtatctgccccggatgttgagaacaactctttatcacttt 223  Q
    ||||||||||||||| ||||| |||||||| |||   || ||||||||||||||||| ||||| || || ||||||||||||||||||| ||||||||    
T  11146124 cttaaagctctcaaaaaaagctttttgatcagtggcaaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcacttt 11146027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 11137905 - 11137739
Alignment:
Q  40 tttgagttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaa 139  Q
    ||||| |||||||| ||||| ||||||||||||||||||||  |||| || |||||||||||||| |||||||||||||| || || | |||||| ||||    
T  11137905 tttgaattaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaa 11137806  T
Q  140 agaaagcgttttgatcggtgctgaatttgttgacaatgctaatcgtatctgccccggatgttgagaa 206  Q
    ||||||| ||||  || |  ||||| ||||||||||||||||| ||||| || || ||||| |||||    
T  11137805 agaaagcatttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaa 11137739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 10793204 - 10793305
Alignment:
Q  45 gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa 144  Q
    ||||||||| ||||||||||| || || ||||||||| | || || |||||||||||||| |||||||||||||||||   |||||||||||||||||||    
T  10793204 gttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaa 10793303  T
Q  145 gc 146  Q
    ||    
T  10793304 gc 10793305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 11119361 - 11119183
Alignment:
Q  45 gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa 144  Q
    ||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| |    ||||| |||  ||||||    
T  11119361 gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa 11119262  T
Q  145 gcgttttgatcggtgctgaatttgttgacaatgctaatcgtatctgccccggatgttgagaacaactctttatcacttt 223  Q
     | ||||| | | | |  || ||||||||||||||||| |||||||| || | |||||||||||| ||||  |||||||    
T  11119261 acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcacttt 11119183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 11111590 - 11111514
Alignment:
Q  45 gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattg 121  Q
    ||||| ||| ||||||||||||||||| ||||||||| | || || |||||| ||||||| ||||||||||||||||    
T  11111590 gttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcattg 11111514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University