View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_4 (Length: 516)
Name: NF13823_low_4
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_4 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Original strand, 20415529 - 20416004
Alignment:
| Q |
9 |
gaagaatatggtgaaagggttaccacagatcaagctacctagttaactatgtgataaatgttgcactagaaaacaagcaagaagctcatacaaggctgga |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
20415529 |
gaagaaaatggtgaaagggttaccacagatcaagctacctagttaactatgtgataaatgttgcactagaaaacaagcaagaagctcatacaaggttgta |
20415628 |
T |
|
| Q |
109 |
attccagttaaagaaactaggaagcttgaagttattcactattatgtttatggaccatttgatgtcaaatcactgggaggtaacaactactttgcgtcat |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20415629 |
attccagttaaagaaactaggaagcttgtagttattcactattatgtttatggaacatttgatgtcaaatcactgggaggtaacaactactttgcgtcat |
20415728 |
T |
|
| Q |
209 |
tcatagatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatgctagtttagaatg |
308 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20415729 |
tcatagatgaatttactagaaagctgtga-------------ccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatgctagtttagaatg |
20415815 |
T |
|
| Q |
309 |
aaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagtttaaggactttttcttatcaagtggcataaattatga |
408 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20415816 |
aaaatggtgaaatgattggcaaattaagaacaaatggaagaagtgggtatacatctagtgagtttaaggactttttcttatcaagtggcataaattatga |
20415915 |
T |
|
| Q |
409 |
agtaactgctccctacactccacaacacaatgacacatcaaaaagaaagaagataaccatagtcaccgtgatgagaagcatgtcgaaac |
497 |
Q |
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| T |
20415916 |
agtaactgctccctacactccacaacacaatggcacatcaaaaagaaagaaaataaccatagtcacggtgatgagaagcatgtcgaaac |
20416004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 440
Target Start/End: Original strand, 9505601 - 9505844
Alignment:
| Q |
196 |
tactttgcgtcattcatagatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatg |
295 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||| || |||||||||| || |||||| ||| || ||| |||||||||||| ||||| || |
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| T |
9505601 |
tactttgtgacattcatagatgaatttactagaaagttatggatttacttgatggctaagaaagatgaagtatttggt-gtgtttaagaagtttagactg |
9505699 |
T |
|
| Q |
296 |
ctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagtttaaggactttttcttatcaagtg |
395 |
Q |
| |
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|||||| | ||||||| |||| |||||||| ||| ||||||| ||||| ||||||||||||| || | |||||| || ||||||| || ||||| || |
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| T |
9505700 |
ctagttcaaaatgaaagtggtgaaatgattagcaggctaagaactgatggaggaggtgagtatacttccaatgagttcaatgacttttgctcatcaaatg |
9505799 |
T |
|
| Q |
396 |
gcataaattatgaagtaactgctccctacactccacaacacaatg |
440 |
Q |
| |
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|||||||| ||||||| ||||| || ||||| || |||||||||| |
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| T |
9505800 |
gcataaatcatgaagtcactgcaccatacacacctcaacacaatg |
9505844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 440
Target Start/End: Complemental strand, 16839035 - 16838792
Alignment:
| Q |
196 |
tactttgcgtcattcatagatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatg |
295 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||| || ||| ||||| || |||||| ||| || ||| |||||||||||| ||||| || |
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| T |
16839035 |
tactttgtgacattcatagatgaatttactagaaagttatggattcacttgttggctaagaaagatgaagtatttggt-gtgtttaagaagtttagactg |
16838937 |
T |
|
| Q |
296 |
ctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagtttaaggactttttcttatcaagtg |
395 |
Q |
| |
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|||||| | ||| ||| |||| |||||||| ||| ||||||| ||||| ||||||||||||| || | |||||| || || |||| | ||||| || |
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| T |
16838936 |
ctagttcaaaatcaaagtggtgaaatgattagcaggctaagaactcatggaggaggtgagtatacttccaatgagttcaatgatttttgttcatcaaatg |
16838837 |
T |
|
| Q |
396 |
gcataaattatgaagtaactgctccctacactccacaacacaatg |
440 |
Q |
| |
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|||||||| ||||||| ||||| || ||||| || |||||||||| |
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|
| T |
16838836 |
gcataaatcatgaagtcactgcaccatacacacctcaacacaatg |
16838792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 438
Target Start/End: Complemental strand, 45495236 - 45494995
Alignment:
| Q |
196 |
tactttgcgtcattcatagatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatg |
295 |
Q |
| |
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||||||| | ||||||||||||||||||||||||| || || || |||||| || |||||| ||| || ||| |||||||||||| ||||| | |
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| T |
45495236 |
tactttgtgacattcatagatgaatttactagaaaattatggatctacttgttggctaagaaagatgaagtatttggt-gtgtttaagaagtttagacta |
45495138 |
T |
|
| Q |
296 |
ctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagtttaaggactttttcttatcaagtg |
395 |
Q |
| |
|
|||||| | ||||||| |||| |||||||| || ||||||| ||||| ||||||||||||| || | |||||| || || |||| || ||||| | |
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|
| T |
45495137 |
ctagttcaaaatgaaagtggtgaaatgattatcaggctaagaactgatggatgaggtgagtatacttccaatgagttcaatgatttttgctcatcaaata |
45495038 |
T |
|
| Q |
396 |
gcataaattatgaagtaactgctccctacactccacaacacaa |
438 |
Q |
| |
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|||||||| ||||||| ||||| || ||||| || |||||||| |
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| T |
45495037 |
gcataaatcatgaagtcactgcaccatacacacctcaacacaa |
45494995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 438
Target Start/End: Complemental strand, 45502978 - 45502737
Alignment:
| Q |
196 |
tactttgcgtcattcatagatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatg |
295 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| || || || |||||| || |||||| ||| || ||| |||||||||||| ||||| | |
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| T |
45502978 |
tactttgtgacattcatagatgaatttactagaaaattatggatctacttgttggctaagaaagatgaagtatttggt-gtgtttaagaagtttagacta |
45502880 |
T |
|
| Q |
296 |
ctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagtttaaggactttttcttatcaagtg |
395 |
Q |
| |
|
|||||| | ||||||| |||| |||||||| || ||||||| ||||| ||||||||||||| || | |||||| || || |||| || ||||| | |
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|
| T |
45502879 |
ctagttcaaaatgaaagtggtgaaatgattatcaggctaagaactgatggatgaggtgagtatacttccaatgagttcaatgatttttgctcatcaaata |
45502780 |
T |
|
| Q |
396 |
gcataaattatgaagtaactgctccctacactccacaacacaa |
438 |
Q |
| |
|
|||||||| ||||||| ||||| || ||||| || |||||||| |
|
|
| T |
45502779 |
gcataaatcatgaagtcactgcaccatacacacctcaacacaa |
45502737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 440
Target Start/End: Complemental strand, 368583 - 368418
Alignment:
| Q |
275 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
374 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||||| || | |||||| | |
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|
| T |
368583 |
gtgtttaagaagtttagattgctagttcaaaatgaaagtggtgaaatgattagcaggctaagaactgatggagggggtgagtatacttccaatgagttca |
368484 |
T |
|
| Q |
375 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatg |
440 |
Q |
| |
|
| || |||| || ||||| |||||||||| ||||||| ||| | || |||| || |||||||||| |
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|
| T |
368483 |
atgatttttgctaatcaaatggcataaatcatgaagtcactacaccatacatacctcaacacaatg |
368418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 368695 - 368621
Alignment:
| Q |
159 |
tggaccatttgatgtcaaatcactgggaggtaacaactactttgcgtcattcatagatgaatttactagaaagtt |
233 |
Q |
| |
|
|||||| ||||| || |||||| | ||||| || | ||||||| | |||||||||||||||||||||||||||| |
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|
| T |
368695 |
tggaccctttgaagtgaaatcagtaggaggaaatagatactttgtgacattcatagatgaatttactagaaagtt |
368621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 30738199 - 30738255
Alignment:
| Q |
214 |
gatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgttt |
270 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
30738199 |
gatgaatttactagaaaattgtggatttacttgatagccaagaaaagtgatttgttt |
30738255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 440
Target Start/End: Original strand, 62819 - 63045
Alignment:
| Q |
213 |
agatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgtttcaaagtgtttaagaagattagaatgctagtttagaatgaaaa |
312 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| || |||| | |||| || ||| |||||||| ||| ||||| |||||||| | || |||| |
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|
| T |
62819 |
agatgaatttactagaaagttatggatttacttgttggctaagacaggtgaagtatttggt-gtgtttaaaaagtttagactgctagttcaaaacgaaag |
62917 |
T |
|
| Q |
313 |
tggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagtttaaggactttttcttatcaagtggcataaattatgaagta |
412 |
Q |
| |
|
|||| || ||||| | | ||||||| ||||| ||||||||||||| || | |||||| || ||||||| || ||| | |||||||||| |||||||| |
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|
| T |
62918 |
tggtgaagtgattagtaggctaagaactgatggaggaggtgagtatacttccactgagttcaatgacttttgctcatcgaatggcataaatcatgaagta |
63017 |
T |
|
| Q |
413 |
actgctccctacactccacaacacaatg |
440 |
Q |
| |
|
||| | || |||| || |||||||||| |
|
|
| T |
63018 |
actacaccatacatacctcaacacaatg |
63045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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