View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_6 (Length: 495)
Name: NF13823_low_6
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 43553878 - 43553408
Alignment:
| Q |
8 |
tgaaatgaagataagctatgaagaaaaggttggttgcttcatcatgtaccatgtcaatatttacggctccagaagatctatcaacagctgaagaaagatc |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43553878 |
tgaaatgaagataaactatgaagaaaaggttggttgcttcatcatataccatgtcaatatttacagctccagaagatctatcaacagctgaagaaagatc |
43553779 |
T |
|
| Q |
108 |
ggcaacactgagaaactttccttcgctgcatttttcatttgtttcacccacctgcaacacaccatccttggtaacctctcctgaggtagcagatttctcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553778 |
ggcaacactgagaaactttccttcgctgcatttttcatttgtttcacccgcctgcaacacaccatccttggtaacctctcctgaggtagcagatttctcc |
43553679 |
T |
|
| Q |
208 |
aagctgcaaacaaaagcatcatcgacataggaaaaatataacttgtgatcaagcaaacaagtaggcttacgagacaaaccgtgaaaccccttgctgtctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43553678 |
aagctgcaaacaaaagcatcatcgacataggaaaaatataacttgtgatcaagtaagcaagtaggc-tacgagacaaaccgtgaaaccccttgctgtctc |
43553580 |
T |
|
| Q |
308 |
ttaaccgccgaagtagaaaaaatggaagcattctttagattactagtttgctccatgtatggattttcctgaacat-agtaacaatattaatcttggatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43553579 |
ttaaccgccgaagtagaaaaaatggaagcattctttagattactagtttgctccatgtatggattttcctgaacataagtaacaatattaatcttggatc |
43553480 |
T |
|
| Q |
407 |
aataatagaacagagatgtcaacagtcaactaaataaagtaaacaaatattagtcgtggtttgggcatatat |
478 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553479 |
aataatagaacagagatgtcaaccgtcaactaaataaagtaaacaaatattagtcgtggtttgggcatatat |
43553408 |
T |
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