View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_8 (Length: 460)
Name: NF13823_low_8
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 65 - 418
Target Start/End: Complemental strand, 6395602 - 6395249
Alignment:
| Q |
65 |
taatttcttacctttctcatcactagatctaagggttctatatagagcataatctgaaatgatgatctatgatcctaaattcctaaatgcaaaatgaaag |
164 |
Q |
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| T |
6395602 |
taatttcttacctttctcatcactagatctaagggttctatatagagcataatctgaaatgatgatctatgatcctaaattcctaaatgcaaaatgaaag |
6395503 |
T |
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| Q |
165 |
aatttgaatcgaaaaacttactaattgaatggtgagtgagagggaggtgcccgcaagaatgagaagaatctgcaaattgaacacacaaattataaaaacc |
264 |
Q |
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| T |
6395502 |
aatttgaatcgaaaaacttactaattgaatggtgagtgagagggaggtgcccgcaagaatgagaagaatctgcaaattgaacacacaaattataaaaacc |
6395403 |
T |
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| Q |
265 |
agtttcaaattcagaagaaattgatgagaatgggaagaaatttcatagttggctaacatgtatcaactgttataatgcacctannnnnnngcatatgcat |
364 |
Q |
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| T |
6395402 |
agtttcaaattcagaagaaattgatgagaatgggaagaaatttcatagttggctaacatgtatcaactgttataatgtacctatttttttgcatatgcat |
6395303 |
T |
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| Q |
365 |
tttatatgatagatatactataggagcagtaacactataaactcttaaactagt |
418 |
Q |
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| T |
6395302 |
tttatatgagatatatactataggagcagtaacactataaactcttaaactagt |
6395249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 43597889 - 43597806
Alignment:
| Q |
226 |
agaagaatctgcaaattgaacacacaaattataaaaaccagtttcaaattcagaagaaattgatgagaatgggaagaaatttca |
309 |
Q |
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| T |
43597889 |
agaagaatctacaaattgaacacatatactagaaaaattagcttcaaattcagaagaaattgatgagaatggtaagaaatttca |
43597806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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