View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13823_low_9 (Length: 453)
Name: NF13823_low_9
Description: NF13823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13823_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 438
Target Start/End: Original strand, 39987194 - 39987611
Alignment:
| Q |
21 |
aactgataattactctttctcaccctcccatgattacttcaactttgaactttccgctaactcttggtcacaaaacatcctccttgaaactgcacgtgca |
120 |
Q |
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| T |
39987194 |
aactgataattactctttctcaccctcccatgattacttcaactttgaattctccggtcactcttggtcacaaaacatcctccttgaaactgcacgtgca |
39987293 |
T |
|
| Q |
121 |
ttttccgacaatcacacaaaccgaatccaacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaactttcatcttatt |
220 |
Q |
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| T |
39987294 |
ttttccgacaataacacaaaccgaatccaacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaactttcatcttatt |
39987393 |
T |
|
| Q |
221 |
ttcttcaagctttgtttagtcgcatgaacgacgcgggagatagaacctacaaaaccttaacaaccgcgtcggaaaaaacatgttcctttgattcaacgag |
320 |
Q |
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| T |
39987394 |
ttcttcaagctttgtttagtcgcatgaacgacgcgggagatagaacctacaaaaccttaacaaccgcgtcggaaaaaacatgttcctttgattcaacgag |
39987493 |
T |
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| Q |
321 |
gaagatgttgttgaagttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaa |
420 |
Q |
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| T |
39987494 |
gaagatgttgttgaagttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaa |
39987593 |
T |
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| Q |
421 |
cttcacataattgatatt |
438 |
Q |
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| T |
39987594 |
cttcacataattgatatt |
39987611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 438
Target Start/End: Complemental strand, 42485925 - 42485821
Alignment:
| Q |
334 |
aagttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaacttcacataattg |
433 |
Q |
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||||| ||||| || |||||||||||||| ||||||||||| ||| | || |||||||| |||||||| || || || | |||||||||||||||| |
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| T |
42485925 |
aagtttcaagaggtaagtccatggacaacttttggacacgtagcatcaaatggtgctattttagaagctttagatggagagaaaaaacttcacataattg |
42485826 |
T |
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| Q |
434 |
atatt |
438 |
Q |
| |
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||||| |
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| T |
42485825 |
atatt |
42485821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 5366013 - 5365952
Alignment:
| Q |
148 |
caacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaact |
209 |
Q |
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|||||||||||||||||||| ||||| || || |||| |||||||||| ||| |||||||| |
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| T |
5366013 |
caacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaact |
5365952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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